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Artigo de periodico
Characterizing the regulatory logic of transcriptional control at the DNA sequence level by ensembles of thermodynamic models (2025)
Sabino, Alan Utsuni ; Guerreiro, Drielly de Moraes ; Kim, Ah-Ram; Ramos, Alexandre Ferreira ; Reinitz, John
Source: Bioinformatics. Unidades: EACH, FM
Assunto: DNA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
SABINO, Alan Utsuni et al. Characterizing the regulatory logic of transcriptional control at the DNA sequence level by ensembles of thermodynamic models. Bioinformatics, v. 41, n. 10, p. 01-11, 2025Tradução . . Disponível em: http://dx.doi.org/10.1093/bioinformatics/btaf534. Acesso em: 08 nov. 2025.
APA
Sabino, A. U., Guerreiro, D. de M., Kim, A. -R., Ramos, A. F., & Reinitz, J. (2025). Characterizing the regulatory logic of transcriptional control at the DNA sequence level by ensembles of thermodynamic models. Bioinformatics, 41( 10), 01-11. doi:10.1093/bioinformatics/btaf534
NLM
Sabino AU, Guerreiro D de M, Kim A-R, Ramos AF, Reinitz J. Characterizing the regulatory logic of transcriptional control at the DNA sequence level by ensembles of thermodynamic models [Internet]. Bioinformatics. 2025 ; 41( 10): 01-11.[citado 2025 nov. 08 ] Available from: http://dx.doi.org/10.1093/bioinformatics/btaf534
Vancouver
Sabino AU, Guerreiro D de M, Kim A-R, Ramos AF, Reinitz J. Characterizing the regulatory logic of transcriptional control at the DNA sequence level by ensembles of thermodynamic models [Internet]. Bioinformatics. 2025 ; 41( 10): 01-11.[citado 2025 nov. 08 ] Available from: http://dx.doi.org/10.1093/bioinformatics/btaf534
Artigo de periodico
AGHmatrix: genetic relationship matrices in R (2023)
Amadeu, Rodrigo R; Garcia, Antonio Augusto Franco ; Munoz, Patricio R; Ferrão, Luís Felipe V
Source: Bioinformatics. Unidade: ESALQ
Subjects: BIOINFORMÁTICA, GENEALOGIA, GENÔMICA, MARCADOR MOLECULAR, MATRIZES, R (SOFTWARE ESTATÍSTICO)
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
AMADEU, Rodrigo R et al. AGHmatrix: genetic relationship matrices in R. Bioinformatics, v. 39, n. 7, p. 1-4, 2023Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/btad445. Acesso em: 08 nov. 2025.
APA
Amadeu, R. R., Garcia, A. A. F., Munoz, P. R., & Ferrão, L. F. V. (2023). AGHmatrix: genetic relationship matrices in R. Bioinformatics, 39( 7), 1-4. doi:10.1093/bioinformatics/btad445
NLM
Amadeu RR, Garcia AAF, Munoz PR, Ferrão LFV. AGHmatrix: genetic relationship matrices in R [Internet]. Bioinformatics. 2023 ; 39( 7): 1-4.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btad445
Vancouver
Amadeu RR, Garcia AAF, Munoz PR, Ferrão LFV. AGHmatrix: genetic relationship matrices in R [Internet]. Bioinformatics. 2023 ; 39( 7): 1-4.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btad445
Artigo de periodico
CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes (2020)
Silva, Vinicius da ; Ramos, Marcel; Groenen, Martien; Crooijmans, Richard; Johansson, Anna; Regitano, Luciana; Coutinho, Luiz Lehmann ; Zimmer, Ralf; Waldron, Levi ; Geistlinger, Ludwig
Source: Bioinformatics. Unidade: ESALQ
Subjects: DNA, EXPRESSÃO GÊNICA, FENÓTIPOS, GENÔMICA, MARCADOR MOLECULAR, SEQUENCIAMENTO GENÉTICO, SOFTWARES, VARIAÇÃO GENÉTICA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
SILVA, Vinicius da et al. CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. Bioinformatics, v. 36, n. 3, 2020Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/btz632. Acesso em: 08 nov. 2025.
APA
Silva, V. da, Ramos, M., Groenen, M., Crooijmans, R., Johansson, A., Regitano, L., et al. (2020). CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. Bioinformatics, 36( 3). doi:10.1093/bioinformatics/btz632
NLM
Silva V da, Ramos M, Groenen M, Crooijmans R, Johansson A, Regitano L, Coutinho LL, Zimmer R, Waldron L, Geistlinger L. CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes [Internet]. Bioinformatics. 2020 ; 36( 3):[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btz632
Vancouver
Silva V da, Ramos M, Groenen M, Crooijmans R, Johansson A, Regitano L, Coutinho LL, Zimmer R, Waldron L, Geistlinger L. CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes [Internet]. Bioinformatics. 2020 ; 36( 3):[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btz632
Artigo de periodico
ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles (2019)
Silva, Tiago Chedraoui ; Coetzee, Simon G.; Gull, Nicole; Yao, Lijing; Hazelett, Dennis J.; Noushmehr, Houtan ; Lin, De-Chen; Berman, Benjamin P.
Source: Bioinformatics. Unidade: FMRP
Subjects: DNA, METILAÇÃO, EXPRESSÃO GÊNICA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
SILVA, Tiago Chedraoui et al. ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles. Bioinformatics, v. 35, n. 11, p. 1974-1977, 2019Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/bty902. Acesso em: 08 nov. 2025.
APA
Silva, T. C., Coetzee, S. G., Gull, N., Yao, L., Hazelett, D. J., Noushmehr, H., et al. (2019). ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles. Bioinformatics, 35( 11), 1974-1977. doi:10.1093/bioinformatics/bty902
NLM
Silva TC, Coetzee SG, Gull N, Yao L, Hazelett DJ, Noushmehr H, Lin D-C, Berman BP. ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles [Internet]. Bioinformatics. 2019 ; 35( 11): 1974-1977.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/bty902
Vancouver
Silva TC, Coetzee SG, Gull N, Yao L, Hazelett DJ, Noushmehr H, Lin D-C, Berman BP. ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles [Internet]. Bioinformatics. 2019 ; 35( 11): 1974-1977.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/bty902
Artigo de periodico
TabPath: interactive Tables for Metabolic Pathway analysis (2018)
Moraes, Lauro Ângelo Gonçalves de; Felestrino, Érica Barbosa; Assis, Renata de Almeida Barbosa; Matos, Diogo; Lima, Joubert de Castro; Lima, Leandro de Araújo; Almeida, Nalvo Franco; Setubal, João Carlos ; Garcia, Camila Carriao Machado; Moreira, Leandro Marcio
Source: Bioinformatics. Unidade: IQ
Subjects: GENOMAS, FENÓTIPOS, BIOINFORMÁTICA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
MORAES, Lauro Ângelo Gonçalves de et al. TabPath: interactive Tables for Metabolic Pathway analysis. Bioinformatics, v. 34, n. 6, p. 1040-1042, 2018Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/btx714. Acesso em: 08 nov. 2025.
APA
Moraes, L. Â. G. de, Felestrino, É. B., Assis, R. de A. B., Matos, D., Lima, J. de C., Lima, L. de A., et al. (2018). TabPath: interactive Tables for Metabolic Pathway analysis. Bioinformatics, 34( 6), 1040-1042. doi:10.1093/bioinformatics/btx714
NLM
Moraes LÂG de, Felestrino ÉB, Assis R de AB, Matos D, Lima J de C, Lima L de A, Almeida NF, Setubal JC, Garcia CCM, Moreira LM. TabPath: interactive Tables for Metabolic Pathway analysis [Internet]. Bioinformatics. 2018 ; 34( 6): 1040-1042.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btx714
Vancouver
Moraes LÂG de, Felestrino ÉB, Assis R de AB, Matos D, Lima J de C, Lima L de A, Almeida NF, Setubal JC, Garcia CCM, Moreira LM. TabPath: interactive Tables for Metabolic Pathway analysis [Internet]. Bioinformatics. 2018 ; 34( 6): 1040-1042.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btx714
Artigo de periodico
Is cross-validation better than resubstitution for ranking genes? (2004)
Braga-Neto, Ulisses; Hashimoto, Ronaldo Fumio ; Dougherty, Edward R.; Nguyen, Danh V.; Carroll, Raymond J.
Source: Bioinformatics. Unidade: IME
Assunto: BIOINFORMÁTICA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
BRAGA-NETO, Ulisses et al. Is cross-validation better than resubstitution for ranking genes?. Bioinformatics, v. 20, n. 2, p. 253-258, 2004Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/btg399. Acesso em: 08 nov. 2025.
APA
Braga-Neto, U., Hashimoto, R. F., Dougherty, E. R., Nguyen, D. V., & Carroll, R. J. (2004). Is cross-validation better than resubstitution for ranking genes? Bioinformatics, 20( 2), 253-258. doi:10.1093/bioinformatics/btg399
NLM
Braga-Neto U, Hashimoto RF, Dougherty ER, Nguyen DV, Carroll RJ. Is cross-validation better than resubstitution for ranking genes? [Internet]. Bioinformatics. 2004 ; 20( 2): 253-258.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btg399
Vancouver
Braga-Neto U, Hashimoto RF, Dougherty ER, Nguyen DV, Carroll RJ. Is cross-validation better than resubstitution for ranking genes? [Internet]. Bioinformatics. 2004 ; 20( 2): 253-258.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btg399
Artigo de periodico
Growing genetic regulatory networks from seed genes (2004)
Hashimoto, Ronaldo Fumio ; Kim, Seungchan; Shumulevich, Ilya; Zhang, Wei; Bittner, Michael L; Dougherty, Edward R
Source: Bioinformatics. Unidade: IME
Subjects: BIOINFORMÁTICA, COMBINATÓRIA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
HASHIMOTO, Ronaldo Fumio et al. Growing genetic regulatory networks from seed genes. Bioinformatics, v. 20, n. 8, p. 1241-1247, 2004Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/bth074. Acesso em: 08 nov. 2025.
APA
Hashimoto, R. F., Kim, S., Shumulevich, I., Zhang, W., Bittner, M. L., & Dougherty, E. R. (2004). Growing genetic regulatory networks from seed genes. Bioinformatics, 20( 8), 1241-1247. doi:10.1093/bioinformatics/bth074
NLM
Hashimoto RF, Kim S, Shumulevich I, Zhang W, Bittner ML, Dougherty ER. Growing genetic regulatory networks from seed genes [Internet]. Bioinformatics. 2004 ; 20( 8): 1241-1247.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/bth074
Vancouver
Hashimoto RF, Kim S, Shumulevich I, Zhang W, Bittner ML, Dougherty ER. Growing genetic regulatory networks from seed genes [Internet]. Bioinformatics. 2004 ; 20( 8): 1241-1247.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/bth074

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