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Artigo de periodico
ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages (2024)
Nachtigall, Pedro Gabriel ; Durham, Alan Mitchell ; Rokyta, Darin R. ; Junqueira-de-azevedo, Inacio Loiola Meirelles
Source: GigaScience. Unidades: IME, IB
Subjects: COMPUTAÇÃO APLICADA, GENÔMICA
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ABNT
NACHTIGALL, Pedro Gabriel et al. ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages. GigaScience, v. 13, p. 1-17, 2024Tradução . . Disponível em: https://doi.org/10.1093/gigascience/giad116. Acesso em: 27 jun. 2024.
APA
Nachtigall, P. G., Durham, A. M., Rokyta, D. R., & Junqueira-de-azevedo, I. L. M. (2024). ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages. GigaScience, 13, 1-17. doi:10.1093/gigascience/giad116
NLM
Nachtigall PG, Durham AM, Rokyta DR, Junqueira-de-azevedo ILM. ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages [Internet]. GigaScience. 2024 ; 13 1-17.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/gigascience/giad116
Vancouver
Nachtigall PG, Durham AM, Rokyta DR, Junqueira-de-azevedo ILM. ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages [Internet]. GigaScience. 2024 ; 13 1-17.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/gigascience/giad116
Artigo de periodico
CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts (2021)
Nachtigall, Pedro Gabriel ; Kashiwabara, André Yoshiaki ; Durham, Alan Mitchell
Source: Briefings in Bioinformatics. Unidade: IME
Subjects: BIOINFORMÁTICA, SEQUENCIAMENTO GENÉTICO
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ABNT
NACHTIGALL, Pedro Gabriel e KASHIWABARA, André Yoshiaki e DURHAM, Alan Mitchell. CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts. Briefings in Bioinformatics, v. 22, n. 3, p. 1-11, 2021Tradução . . Disponível em: https://doi.org/10.1093/bib/bbaa045. Acesso em: 27 jun. 2024.
APA
Nachtigall, P. G., Kashiwabara, A. Y., & Durham, A. M. (2021). CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts. Briefings in Bioinformatics, 22( 3), 1-11. doi:10.1093/bib/bbaa045
NLM
Nachtigall PG, Kashiwabara AY, Durham AM. CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts [Internet]. Briefings in Bioinformatics. 2021 ; 22( 3): 1-11.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/bib/bbaa045
Vancouver
Nachtigall PG, Kashiwabara AY, Durham AM. CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts [Internet]. Briefings in Bioinformatics. 2021 ; 22( 3): 1-11.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/bib/bbaa045
Parte de monografia/livro
Computational analysis of transposable elements and circRNAs in plants (2021)
Oliveira, Liliane Santana; Patera, Andressa Caroline; Domingues, Douglas Silva ; Sanches, Danilo Sipoli; Lopes, Fabricio Martins ; Bugatti, Pedro Henrique ; Saito, Priscila Tiemi Maeda; Maracaja-Coutinho, Vinicius ; Durham, Alan Mitchell ; Paschoal, Alexandre Rossi
Source: Plant circular RNAs : methods and protocols. Unidade: IME
Assunto: BIOINFORMÁTICA
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OLIVEIRA, Liliane Santana et al. Computational analysis of transposable elements and circRNAs in plants. Plant circular RNAs : methods and protocols. Tradução . New York: Humana, 2021. . Disponível em: https://doi.org/10.1007/978-1-0716-1645-1_9. Acesso em: 27 jun. 2024.
APA
Oliveira, L. S., Patera, A. C., Domingues, D. S., Sanches, D. S., Lopes, F. M., Bugatti, P. H., et al. (2021). Computational analysis of transposable elements and circRNAs in plants. In Plant circular RNAs : methods and protocols. New York: Humana. doi:10.1007/978-1-0716-1645-1_9
NLM
Oliveira LS, Patera AC, Domingues DS, Sanches DS, Lopes FM, Bugatti PH, Saito PTM, Maracaja-Coutinho V, Durham AM, Paschoal AR. Computational analysis of transposable elements and circRNAs in plants [Internet]. In: Plant circular RNAs : methods and protocols. New York: Humana; 2021. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-1-0716-1645-1_9
Vancouver
Oliveira LS, Patera AC, Domingues DS, Sanches DS, Lopes FM, Bugatti PH, Saito PTM, Maracaja-Coutinho V, Durham AM, Paschoal AR. Computational analysis of transposable elements and circRNAs in plants [Internet]. In: Plant circular RNAs : methods and protocols. New York: Humana; 2021. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-1-0716-1645-1_9
Artigo de periodico
TSSFinder—fast and accurate ab initio prediction of the core promoter in eukaryotic genomes (2021)
Oliveira, Mauro de Medeiros ; Bonadio, Ígor ; Melo, Alícia Lie de ; Souza, Gláucia Mendes ; Durham, Alan Mitchell
Source: Briefings in Bioinformatics. Unidades: IQ, IME, BIOINFORMÁTICA
Subjects: TRANSCRIÇÃO GÊNICA, BIOINFORMÁTICA
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ABNT
OLIVEIRA, Mauro de Medeiros et al. TSSFinder—fast and accurate ab initio prediction of the core promoter in eukaryotic genomes. Briefings in Bioinformatics, v. 22, n. 6, p. 1-12, 2021Tradução . . Disponível em: https://doi.org/10.1093/bib/bbab198. Acesso em: 27 jun. 2024.
APA
Oliveira, M. de M., Bonadio, Í., Melo, A. L. de, Souza, G. M., & Durham, A. M. (2021). TSSFinder—fast and accurate ab initio prediction of the core promoter in eukaryotic genomes. Briefings in Bioinformatics, 22( 6), 1-12. doi:10.1093/bib/bbab198
NLM
Oliveira M de M, Bonadio Í, Melo AL de, Souza GM, Durham AM. TSSFinder—fast and accurate ab initio prediction of the core promoter in eukaryotic genomes [Internet]. Briefings in Bioinformatics. 2021 ; 22( 6): 1-12.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/bib/bbab198
Vancouver
Oliveira M de M, Bonadio Í, Melo AL de, Souza GM, Durham AM. TSSFinder—fast and accurate ab initio prediction of the core promoter in eukaryotic genomes [Internet]. Briefings in Bioinformatics. 2021 ; 22( 6): 1-12.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/bib/bbab198
Trabalho de evento-resumo
Characterization of the promoter region of two drought-responsive SAS (2020)
Melo, Alícia Lie de; Durham, Alan Mitchell ; Souza, Gláucia Mendes
Source: Poster Session. Conference titles: Biofuture Summit e BBEST Conference. Unidades: IQ, IME, BIOINFORMÁTICA
Subjects: REGULAÇÃO GÊNICA, SEQUENCIAMENTO GENÉTICO, CANA-DE-AÇÚCAR
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ABNT
MELO, Alícia Lie de e DURHAM, Alan Mitchell e SOUZA, Gláucia Mendes. Characterization of the promoter region of two drought-responsive SAS. 2020, Anais.. São Paulo: The Bioenergy Society (SBE); SBBq, 2020. Disponível em: https://repositorio.usp.br/directbitstream/e1cf0ba6-c312-4607-bffb-fb95dcd2597e/3009033.pdf. Acesso em: 27 jun. 2024.
APA
Melo, A. L. de, Durham, A. M., & Souza, G. M. (2020). Characterization of the promoter region of two drought-responsive SAS. In Poster Session. São Paulo: The Bioenergy Society (SBE); SBBq. Recuperado de https://repositorio.usp.br/directbitstream/e1cf0ba6-c312-4607-bffb-fb95dcd2597e/3009033.pdf
NLM
Melo AL de, Durham AM, Souza GM. Characterization of the promoter region of two drought-responsive SAS [Internet]. Poster Session. 2020 ;[citado 2024 jun. 27 ] Available from: https://repositorio.usp.br/directbitstream/e1cf0ba6-c312-4607-bffb-fb95dcd2597e/3009033.pdf
Vancouver
Melo AL de, Durham AM, Souza GM. Characterization of the promoter region of two drought-responsive SAS [Internet]. Poster Session. 2020 ;[citado 2024 jun. 27 ] Available from: https://repositorio.usp.br/directbitstream/e1cf0ba6-c312-4607-bffb-fb95dcd2597e/3009033.pdf
Parte de monografia/livro
Noncoding RNAs databases: current status and trends (2019)
Maracaja-Coutinho, Vinicius ; Paschoal, Alexandre Rossi ; Caris-Maldonado, José Carlos; Borges, Pedro Vinícius; Ferreira, Almir José; Durham, Alan Mitchell
Source: Computational biology of non-coding RNA : methods and protocols. Unidade: IME
Subjects: BIOINFORMÁTICA, BANCO DE DADOS, RNA
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ABNT
MARACAJA-COUTINHO, Vinicius et al. Noncoding RNAs databases: current status and trends. Computational biology of non-coding RNA : methods and protocols. Tradução . New York: Springer, 2019. . Disponível em: https://doi.org/10.1007/978-1-4939-8982-9_10. Acesso em: 27 jun. 2024.
APA
Maracaja-Coutinho, V., Paschoal, A. R., Caris-Maldonado, J. C., Borges, P. V., Ferreira, A. J., & Durham, A. M. (2019). Noncoding RNAs databases: current status and trends. In Computational biology of non-coding RNA : methods and protocols. New York: Springer. doi:10.1007/978-1-4939-8982-9_10
NLM
Maracaja-Coutinho V, Paschoal AR, Caris-Maldonado JC, Borges PV, Ferreira AJ, Durham AM. Noncoding RNAs databases: current status and trends [Internet]. In: Computational biology of non-coding RNA : methods and protocols. New York: Springer; 2019. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-1-4939-8982-9_10
Vancouver
Maracaja-Coutinho V, Paschoal AR, Caris-Maldonado JC, Borges PV, Ferreira AJ, Durham AM. Noncoding RNAs databases: current status and trends [Internet]. In: Computational biology of non-coding RNA : methods and protocols. New York: Springer; 2019. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-1-4939-8982-9_10
Artigo de periodico
Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop (2019)
Souza, Gláucia Mendes ; Van Sluys, Marie-Anne ; Lembke, Carolina Gimiliani ; Lee, Hayan; Margarido, Gabriel Rodrigues Alves ; Hotta, Carlos Takeshi ; Gaiarsa, Jonas Weissmann ; Diniz, Augusto Lima ; Oliveira, Mauro de Medeiros ; Ferreira, Sávio de Siqueira ; Nishiyama Junior, Milton Yutaka ; Caten, Felipe Ten ; Ragagnin, Geovani Tolfo; Andrade, Pablo de Morais ; Souza, Robson Francisco de ; Nicastro, Gianlucca Gonçalves; Pandya, Ravi ; Kim, Changsoo; Guo, Hui; Durham, Alan Mitchell ; Carneiro, Monalisa Sampaio ; Zhang, Jisen; Zhang, Xingtan; Zhang, Qing; Ming, Ray; Schatz, Michael C ; Davidson, Bob; Paterson, Andrew H; Heckerman, David
Source: GigaScience. Unidades: IQ, IB, ESALQ, ICB, IME, BIOINFORMÁTICA, BIOTECNOLOGIA
Subjects: MICROBIOLOGIA, GENOMAS, CANA-DE-AÇÚCAR, DIVERSIDADE GENÉTICA, BIOMASSA, SEQUENCIAMENTO GENÉTICO, SACAROSE, EXPRESSÃO GÊNICA
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SOUZA, Gláucia Mendes et al. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GigaScience, v. 8, n. 12, p. 18 , 2019Tradução . . Disponível em: https://doi.org/10.1093/gigascience/giz129. Acesso em: 27 jun. 2024.
APA
Souza, G. M., Van Sluys, M. -A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., et al. (2019). Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GigaScience, 8( 12), 18 . doi:10.1093/gigascience/giz129
NLM
Souza GM, Van Sluys M-A, Lembke CG, Lee H, Margarido GRA, Hotta CT, Gaiarsa JW, Diniz AL, Oliveira M de M, Ferreira S de S, Nishiyama Junior MY, Caten FT, Ragagnin GT, Andrade P de M, Souza RF de, Nicastro GG, Pandya R, Kim C, Guo H, Durham AM, Carneiro MS, Zhang J, Zhang X, Zhang Q, Ming R, Schatz MC, Davidson B, Paterson AH, Heckerman D. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop [Internet]. GigaScience. 2019 ; 8( 12): 18 .[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/gigascience/giz129
Vancouver
Souza GM, Van Sluys M-A, Lembke CG, Lee H, Margarido GRA, Hotta CT, Gaiarsa JW, Diniz AL, Oliveira M de M, Ferreira S de S, Nishiyama Junior MY, Caten FT, Ragagnin GT, Andrade P de M, Souza RF de, Nicastro GG, Pandya R, Kim C, Guo H, Durham AM, Carneiro MS, Zhang J, Zhang X, Zhang Q, Ming R, Schatz MC, Davidson B, Paterson AH, Heckerman D. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop [Internet]. GigaScience. 2019 ; 8( 12): 18 .[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/gigascience/giz129
Artigo de periodico
Use of profile hidden Markov models in viral discovery: current insights (2017)
Reyes, Alejandro; Alves, João Marcelo Pereira ; Durham, Alan Mitchell ; Gruber, Arthur
Source: Advances in Genomics and Genetics. Unidades: ICB, IME
Assunto: PARASITOLOGIA
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REYES, Alejandro et al. Use of profile hidden Markov models in viral discovery: current insights. Advances in Genomics and Genetics, v. 7, p. 29-45, 2017Tradução . . Disponível em: https://doi.org/10.2147/AGG.S136574. Acesso em: 27 jun. 2024.
APA
Reyes, A., Alves, J. M. P., Durham, A. M., & Gruber, A. (2017). Use of profile hidden Markov models in viral discovery: current insights. Advances in Genomics and Genetics, 7, 29-45. doi:10.2147/AGG.S136574
NLM
Reyes A, Alves JMP, Durham AM, Gruber A. Use of profile hidden Markov models in viral discovery: current insights [Internet]. Advances in Genomics and Genetics. 2017 ; 7 29-45.[citado 2024 jun. 27 ] Available from: https://doi.org/10.2147/AGG.S136574
Vancouver
Reyes A, Alves JMP, Durham AM, Gruber A. Use of profile hidden Markov models in viral discovery: current insights [Internet]. Advances in Genomics and Genetics. 2017 ; 7 29-45.[citado 2024 jun. 27 ] Available from: https://doi.org/10.2147/AGG.S136574
Artigo de periodico
GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data (2016)
Alves, João Marcelo Pereira ; Oliveira, Andre L. de; Sandberg, Tatiana Orli Milkewitz ; Moreno-Gallego, Jaime L; Toledo, Marcelo A. F. de; Moura, Elisabeth M. M. de; Oliveira, Liliane S; Durham, Alan Mitchell ; Mehnert, Dolores Ursula; Zanotto, Paolo Marinho de Andrade ; Reyes, Alejandro; Gruber, Arthur
Source: Frontiers in Microbiology. Unidades: ICB, IME, IB
Subjects: BIOINFORMÁTICA, PROCESSOS DE MARKOV
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ALVES, João Marcelo Pereira et al. GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data. Frontiers in Microbiology, v. 7, n. article º 269, p. 15 , 2016Tradução . . Disponível em: https://doi.org/10.3389/fmicb.2016.00269. Acesso em: 27 jun. 2024.
APA
Alves, J. M. P., Oliveira, A. L. de, Sandberg, T. O. M., Moreno-Gallego, J. L., Toledo, M. A. F. de, Moura, E. M. M. de, et al. (2016). GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data. Frontiers in Microbiology, 7( article º 269), 15 . doi:10.3389/fmicb.2016.00269
NLM
Alves JMP, Oliveira AL de, Sandberg TOM, Moreno-Gallego JL, Toledo MAF de, Moura EMM de, Oliveira LS, Durham AM, Mehnert DU, Zanotto PM de A, Reyes A, Gruber A. GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data [Internet]. Frontiers in Microbiology. 2016 ; 7( article º 269): 15 .[citado 2024 jun. 27 ] Available from: https://doi.org/10.3389/fmicb.2016.00269
Vancouver
Alves JMP, Oliveira AL de, Sandberg TOM, Moreno-Gallego JL, Toledo MAF de, Moura EMM de, Oliveira LS, Durham AM, Mehnert DU, Zanotto PM de A, Reyes A, Gruber A. GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data [Internet]. Frontiers in Microbiology. 2016 ; 7( article º 269): 15 .[citado 2024 jun. 27 ] Available from: https://doi.org/10.3389/fmicb.2016.00269
Parte de monografia/livro
Small RNA sequencing for squamous cell carcinoma research (2015)
Severino, Patricia; Oliveira, Liliane Santana; Durham, Alan Mitchell
Source: Next generation sequencing in cancer research, volume 2. Unidade: IME
Subjects: COMPUTAÇÃO APLICADA, BIOINFORMÁTICA, SEQUENCIAMENTO GENÉTICO, NEOPLASIAS CUTÂNEAS
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SEVERINO, Patricia e OLIVEIRA, Liliane Santana e DURHAM, Alan Mitchell. Small RNA sequencing for squamous cell carcinoma research. Next generation sequencing in cancer research, volume 2. Tradução . Cham: Springer, 2015. . Disponível em: https://doi.org/10.1007/978-3-319-15811-2_16. Acesso em: 27 jun. 2024.
APA
Severino, P., Oliveira, L. S., & Durham, A. M. (2015). Small RNA sequencing for squamous cell carcinoma research. In Next generation sequencing in cancer research, volume 2. Cham: Springer. doi:10.1007/978-3-319-15811-2_16
NLM
Severino P, Oliveira LS, Durham AM. Small RNA sequencing for squamous cell carcinoma research [Internet]. In: Next generation sequencing in cancer research, volume 2. Cham: Springer; 2015. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-3-319-15811-2_16
Vancouver
Severino P, Oliveira LS, Durham AM. Small RNA sequencing for squamous cell carcinoma research [Internet]. In: Next generation sequencing in cancer research, volume 2. Cham: Springer; 2015. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-3-319-15811-2_16
Artigo de periodico
Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma (2015)
Severino, Patrícia; Oliveira, Liliane Santana; Andreghetto, Flávia Maziero; Torres, Natalia; Curioni, Otavio; Cury, Patricia Maluf; Toporcov, Tatiana Natasha; Paschoal, Alexandre Rossi; Durham, Alan Mitchell
Source: BMC Medical Genomics. Unidades: IME, FSP
Subjects: COMPUTAÇÃO APLICADA, BIOINFORMÁTICA, SEQUENCIAMENTO GENÉTICO, NEOPLASIAS CUTÂNEAS
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ABNT
SEVERINO, Patrícia et al. Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma. BMC Medical Genomics, v. 8, 2015Tradução . . Disponível em: https://doi.org/10.1186/s12920-015-0102-4. Acesso em: 27 jun. 2024.
APA
Severino, P., Oliveira, L. S., Andreghetto, F. M., Torres, N., Curioni, O., Cury, P. M., et al. (2015). Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma. BMC Medical Genomics, 8. doi:10.1186/s12920-015-0102-4
NLM
Severino P, Oliveira LS, Andreghetto FM, Torres N, Curioni O, Cury PM, Toporcov TN, Paschoal AR, Durham AM. Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma [Internet]. BMC Medical Genomics. 2015 ; 8[citado 2024 jun. 27 ] Available from: https://doi.org/10.1186/s12920-015-0102-4
Vancouver
Severino P, Oliveira LS, Andreghetto FM, Torres N, Curioni O, Cury PM, Toporcov TN, Paschoal AR, Durham AM. Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma [Internet]. BMC Medical Genomics. 2015 ; 8[citado 2024 jun. 27 ] Available from: https://doi.org/10.1186/s12920-015-0102-4
Parte de monografia/livro
Interdisciplinaridade em ação na pesquisa e pós-graduação em Bioinformática (2015)
Durham, Alan Mitchell ; Setubal, João Carlos ; Barrera, Júnior
Source: Práticas da interdisciplinaridade no ensino e pesquisa. Unidades: IME, IQ
Subjects: BIOINFORMÁTICA, INTERDISCIPLINARIDADE
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ABNT
DURHAM, Alan Mitchell e SETUBAL, João Carlos e BARRERA, Júnior. Interdisciplinaridade em ação na pesquisa e pós-graduação em Bioinformática. Práticas da interdisciplinaridade no ensino e pesquisa. Tradução . Barueri: Manole, 2015. . . Acesso em: 27 jun. 2024.
APA
Durham, A. M., Setubal, J. C., & Barrera, J. (2015). Interdisciplinaridade em ação na pesquisa e pós-graduação em Bioinformática. In Práticas da interdisciplinaridade no ensino e pesquisa. Barueri: Manole.
NLM
Durham AM, Setubal JC, Barrera J. Interdisciplinaridade em ação na pesquisa e pós-graduação em Bioinformática. In: Práticas da interdisciplinaridade no ensino e pesquisa. Barueri: Manole; 2015. [citado 2024 jun. 27 ]
Vancouver
Durham AM, Setubal JC, Barrera J. Interdisciplinaridade em ação na pesquisa e pós-graduação em Bioinformática. In: Práticas da interdisciplinaridade no ensino e pesquisa. Barueri: Manole; 2015. [citado 2024 jun. 27 ]
Parte de monografia/livro
Using bioinformatics tools to study the role of microRNA in cancer (2014)
Passetti, Fabio; Jorge, Natasha Andressa Nogueira; Durham, Alan Mitchell
Source: Clinical bioinformatics. Unidade: IME
Subjects: BIOINFORMÁTICA, SEQUENCIAMENTO GENÉTICO, NEOPLASIAS
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PASSETTI, Fabio e JORGE, Natasha Andressa Nogueira e DURHAM, Alan Mitchell. Using bioinformatics tools to study the role of microRNA in cancer. Clinical bioinformatics. Tradução . New York: Humana Press, 2014. . Disponível em: https://doi.org/10.1007/978-1-4939-0847-9_7. Acesso em: 27 jun. 2024.
APA
Passetti, F., Jorge, N. A. N., & Durham, A. M. (2014). Using bioinformatics tools to study the role of microRNA in cancer. In Clinical bioinformatics. New York: Humana Press. doi:10.1007/978-1-4939-0847-9_7
NLM
Passetti F, Jorge NAN, Durham AM. Using bioinformatics tools to study the role of microRNA in cancer [Internet]. In: Clinical bioinformatics. New York: Humana Press; 2014. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-1-4939-0847-9_7
Vancouver
Passetti F, Jorge NAN, Durham AM. Using bioinformatics tools to study the role of microRNA in cancer [Internet]. In: Clinical bioinformatics. New York: Humana Press; 2014. [citado 2024 jun. 27 ] Available from: https://doi.org/10.1007/978-1-4939-0847-9_7
Artigo de periodico
The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria (2013)
Rangel, Luiz Thibério; Novaes, Jeniffer; Durham, Alan Mitchell ; Madeira, Alda Maria Backx Noronha ; Gruber, Arthur
Source: Database. Unidades: IME, ICB
Assunto: PARASITOLOGIA
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RANGEL, Luiz Thibério et al. The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria. Database, v. 2013, p. 1-8, 2013Tradução . . Disponível em: https://doi.org/10.1093/database/bat006. Acesso em: 27 jun. 2024.
APA
Rangel, L. T., Novaes, J., Durham, A. M., Madeira, A. M. B. N., & Gruber, A. (2013). The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria. Database, 2013, 1-8. doi:10.1093/database/bat006
NLM
Rangel LT, Novaes J, Durham AM, Madeira AMBN, Gruber A. The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria [Internet]. Database. 2013 ; 2013 1-8.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/database/bat006
Vancouver
Rangel LT, Novaes J, Durham AM, Madeira AMBN, Gruber A. The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria [Internet]. Database. 2013 ; 2013 1-8.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1093/database/bat006
Artigo de periodico
ToPS: a framework to manipulate probabilistic models of sequence data (2013)
Kashiwabara, Andre Yoshiaki; Bonadio, Igor; Onuchic, Vitor; Amado, Felipe; Mathias, Rafael; Durham, Alan Mitchell
Source: Plos Computational Biology. Unidade: IME
Assunto: FRAMEWORKS
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ABNT
KASHIWABARA, Andre Yoshiaki et al. ToPS: a framework to manipulate probabilistic models of sequence data. Plos Computational Biology, v. 9, n. 10, 2013Tradução . . Disponível em: https://doi.org/10.1371/journal.pcbi.1003234. Acesso em: 27 jun. 2024.
APA
Kashiwabara, A. Y., Bonadio, I., Onuchic, V., Amado, F., Mathias, R., & Durham, A. M. (2013). ToPS: a framework to manipulate probabilistic models of sequence data. Plos Computational Biology, 9( 10). doi:10.1371/journal.pcbi.1003234
NLM
Kashiwabara AY, Bonadio I, Onuchic V, Amado F, Mathias R, Durham AM. ToPS: a framework to manipulate probabilistic models of sequence data [Internet]. Plos Computational Biology. 2013 ; 9( 10):[citado 2024 jun. 27 ] Available from: https://doi.org/10.1371/journal.pcbi.1003234
Vancouver
Kashiwabara AY, Bonadio I, Onuchic V, Amado F, Mathias R, Durham AM. ToPS: a framework to manipulate probabilistic models of sequence data [Internet]. Plos Computational Biology. 2013 ; 9( 10):[citado 2024 jun. 27 ] Available from: https://doi.org/10.1371/journal.pcbi.1003234
Artigo de periodico
High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research (2013)
Severino, Patricia; Oliveira, Liliane Santana; Torres, Natalia; Andreghetto, Flavia Maziero; Klingbeil, Maria de Fatima Guarizo; Moyses, Raquel; Wünsch-Filho, Victor; Nunes, Fábio Daumas; Mathor, Monica Beatriz; Paschoal, Alexandre Rossi; Durham, Alan Mitchell
Source: BMC Genomics. Unidades: FO, IME
Subjects: NEOPLASIAS, CARCINOMA DE CÉLULAS ESCAMOSAS
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
SEVERINO, Patricia et al. High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research. BMC Genomics, v. 14, n. 735, p. online 1-15 , 2013Tradução . . Disponível em: https://doi.org/10.1186/1471-2164-14-735. Acesso em: 27 jun. 2024.
APA
Severino, P., Oliveira, L. S., Torres, N., Andreghetto, F. M., Klingbeil, M. de F. G., Moyses, R., et al. (2013). High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research. BMC Genomics, 14( 735), online 1-15 . doi:10.1186/1471-2164-14-735
NLM
Severino P, Oliveira LS, Torres N, Andreghetto FM, Klingbeil M de FG, Moyses R, Wünsch-Filho V, Nunes FD, Mathor MB, Paschoal AR, Durham AM. High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research [Internet]. BMC Genomics. 2013 ;14( 735): online 1-15 .[citado 2024 jun. 27 ] Available from: https://doi.org/10.1186/1471-2164-14-735
Vancouver
Severino P, Oliveira LS, Torres N, Andreghetto FM, Klingbeil M de FG, Moyses R, Wünsch-Filho V, Nunes FD, Mathor MB, Paschoal AR, Durham AM. High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research [Internet]. BMC Genomics. 2013 ;14( 735): online 1-15 .[citado 2024 jun. 27 ] Available from: https://doi.org/10.1186/1471-2164-14-735
Artigo de periodico
Non-coding transcription characterization and annotation (2012)
Paschoal, Alexandre Rossi; Maracajá-Coutinho, Vinicius Ramos Henriques; Setubal, João Carlos ; Simões, Zila Luz Paulino; Verjovski-Almeida, Sergio ; Durham, Alan Mitchell
Source: RNA Biology. Unidades: IQ, FFCLRP, IME
Subjects: BIOINFORMÁTICA, RNA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
PASCHOAL, Alexandre Rossi et al. Non-coding transcription characterization and annotation. RNA Biology, v. 9, n. 3, p. 274-282 : + Supplementary materials ( S1-S92), 2012Tradução . . Disponível em: https://doi.org/10.4161/rna.19352. Acesso em: 27 jun. 2024.
APA
Paschoal, A. R., Maracajá-Coutinho, V. R. H., Setubal, J. C., Simões, Z. L. P., Verjovski-Almeida, S., & Durham, A. M. (2012). Non-coding transcription characterization and annotation. RNA Biology, 9( 3), 274-282 : + Supplementary materials ( S1-S92). doi:10.4161/rna.19352
NLM
Paschoal AR, Maracajá-Coutinho VRH, Setubal JC, Simões ZLP, Verjovski-Almeida S, Durham AM. Non-coding transcription characterization and annotation [Internet]. RNA Biology. 2012 ; 9( 3): 274-282 : + Supplementary materials ( S1-S92).[citado 2024 jun. 27 ] Available from: https://doi.org/10.4161/rna.19352
Vancouver
Paschoal AR, Maracajá-Coutinho VRH, Setubal JC, Simões ZLP, Verjovski-Almeida S, Durham AM. Non-coding transcription characterization and annotation [Internet]. RNA Biology. 2012 ; 9( 3): 274-282 : + Supplementary materials ( S1-S92).[citado 2024 jun. 27 ] Available from: https://doi.org/10.4161/rna.19352
Artigo de periodico
A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages (2012)
Novaes, Jeniffer; Rangel, Luiz Thiberio Lira Diniz; Ferro, Milene; Abe, Ricardo Y; Manha, Alessandra Popov dos Santos; de Mello, Joana C. M; Varuzza, , Leonardo; Durham, Alan Mitchell ; Madeira, Alda Maria Backx Noronha ; Gruber, Arthur
Source: International Journal of Parasitology. Unidades: IME, ICB
Assunto: PARASITOLOGIA
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ABNT
NOVAES, Jeniffer et al. A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages. International Journal of Parasitology, v. 42, p. 3948, 2012Tradução . . Disponível em: https://doi.org/10.1016/j.ijpara.2011.10.008. Acesso em: 27 jun. 2024.
APA
Novaes, J., Rangel, L. T. L. D., Ferro, M., Abe, R. Y., Manha, A. P. dos S., de Mello, J. C. M., et al. (2012). A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages. International Journal of Parasitology, 42, 3948. doi:10.1016/j.ijpara.2011.10.008
NLM
Novaes J, Rangel LTLD, Ferro M, Abe RY, Manha AP dos S, de Mello JCM, Varuzza, Durham AM, Madeira AMBN, Gruber A. A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages [Internet]. International Journal of Parasitology. 2012 ; 42 3948.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1016/j.ijpara.2011.10.008
Vancouver
Novaes J, Rangel LTLD, Ferro M, Abe RY, Manha AP dos S, de Mello JCM, Varuzza, Durham AM, Madeira AMBN, Gruber A. A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages [Internet]. International Journal of Parasitology. 2012 ; 42 3948.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1016/j.ijpara.2011.10.008
Trabalho de evento-anais periodico
Decreasing the number of false positives in sequence classification (2010)
Lima, Ariane Machado ; Kashiwabara, André Yoshiaki ; Durham, Alan Mitchell
Source: BMC Genomics. Conference titles: International Conference of the Brazilian Association for Bioinformatics and Computational Biology. Unidades: EACH, IME
Assunto: BIOINFORMÁTICA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
LIMA, Ariane Machado e KASHIWABARA, André Yoshiaki e DURHAM, Alan Mitchell. Decreasing the number of false positives in sequence classification. BMC Genomics. London: Escola de Artes, Ciências e Humanidades, Universidade de São Paulo. Disponível em: https://doi.org/10.1186/1471-2164-11-S5-S10. Acesso em: 27 jun. 2024. , 2010
APA
Lima, A. M., Kashiwabara, A. Y., & Durham, A. M. (2010). Decreasing the number of false positives in sequence classification. BMC Genomics. London: Escola de Artes, Ciências e Humanidades, Universidade de São Paulo. doi:10.1186/1471-2164-11-S5-S10
NLM
Lima AM, Kashiwabara AY, Durham AM. Decreasing the number of false positives in sequence classification [Internet]. BMC Genomics. 2010 ; 11[citado 2024 jun. 27 ] Available from: https://doi.org/10.1186/1471-2164-11-S5-S10
Vancouver
Lima AM, Kashiwabara AY, Durham AM. Decreasing the number of false positives in sequence classification [Internet]. BMC Genomics. 2010 ; 11[citado 2024 jun. 27 ] Available from: https://doi.org/10.1186/1471-2164-11-S5-S10
Artigo de periodico
Sequence and structural analysis of the 5' noncording region of hepatitis C virus in patients with chronic infection (2009)
Araujo, Flavio Marcos Gomes; Lima, Ariane Machado ; Durham, Alan Mitchell ; Teixeira, Rosangela; Oliveira, Guilherme
Source: Journal of Medical Virology. Unidades: EACH, IME
Subjects: HEPATITE C, BIOINFORMÁTICA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
ARAUJO, Flavio Marcos Gomes et al. Sequence and structural analysis of the 5' noncording region of hepatitis C virus in patients with chronic infection. Journal of Medical Virology, v. 81, n. 7, p. 1212-1219, 2009Tradução . . Disponível em: https://doi.org/10.1002/jmv.21507. Acesso em: 27 jun. 2024.
APA
Araujo, F. M. G., Lima, A. M., Durham, A. M., Teixeira, R., & Oliveira, G. (2009). Sequence and structural analysis of the 5' noncording region of hepatitis C virus in patients with chronic infection. Journal of Medical Virology, 81( 7), 1212-1219. doi:10.1002/jmv.21507
NLM
Araujo FMG, Lima AM, Durham AM, Teixeira R, Oliveira G. Sequence and structural analysis of the 5' noncording region of hepatitis C virus in patients with chronic infection [Internet]. Journal of Medical Virology. 2009 ; 81( 7): 1212-1219.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1002/jmv.21507
Vancouver
Araujo FMG, Lima AM, Durham AM, Teixeira R, Oliveira G. Sequence and structural analysis of the 5' noncording region of hepatitis C virus in patients with chronic infection [Internet]. Journal of Medical Virology. 2009 ; 81( 7): 1212-1219.[citado 2024 jun. 27 ] Available from: https://doi.org/10.1002/jmv.21507

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