Artigo de periodico

Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii) (2018)

• Authors:
  • Nardeli, Sarah Muniz
  • Artico, Sinara
  • Aoyagi, Gustavo Mistsunori
  • Moura, Stéfanie Menezes de
  • Silva, Tatiane da Franca
  • Sá, Maria Fátima Grossi de
  • Romanel, Elisson Antônio da Costa
  • Ferreira, Marcio Alves
• USP affiliated authors: SILVA, TATIANE DA FRANCA - EEL ; ROMANEL, ELISSON ANTÔNIO DA COSTA - EEL ; AOYAGI, GUSTAVO MITSUNORI - EEL
• Unidade: EEL
• Sigla do Departamento: LOT
• DOI: 10.1016/j.plaphy.2018.03.019
• Assunto: BIOTECNOLOGIA
• Keywords: MADS-box genes; Gossypium hirsutum; Gossypium arboreum; Gossypium raimondii; Phylogenetic analysis; Gene expression analysis
• Agências de fomento:
  • Financiamento CAPES
  • Financiamento FAPERJ
  • Financiamento CNPq
• Language: Inglês
• Abstract: The MADS-box gene family encodes transcription factors that share a highly conserved domain known to bind to DNA. Members of this family control various processes of development in plants, from root formation to fruit ripening. In this work, a survey of diploid (Gossypium raimondii and Gossypium arboreum) and tetraploid (Gossypium hirsutum) cotton genomes found a total of 147, 133 and 207 MADS-box genes, respectively, distributed in the MIKC, Mα, Mβ, Mγ, and Mδ subclades. A comparative phylogenetic analysis among cotton species, Arabidopsis, poplar and grapevine MADS-box homologous genes allowed us to evaluate the evolution of each MADS-box lineage in cotton plants and identify sequences within well-established subfamilies. Chromosomal localization and phylogenetic analysis revealed that G. raimondii and G. arboreum showed a conserved evolution of the MIKC subclade and a distinct pattern of duplication events in the Mα, Mγ and Mδ subclades. Additionally, G. hirsutum showed a combination of its parental subgenomes followed by a distinct evolutionary history including gene gain and loss in each subclade. qPCR analysis revealed the expression patterns of putative homologs in the AP1, AP3, AGL6, SEP4, AGL15, AG, AGL17, TM8, SVP, SOC and TT16 subfamilies of G. hirsutum. The identification of putative cotton orthologs is discussed in the light of evolution and gene expression data from other plants. This analysis of the MADS-box genes in Gossypium species opens an avenue to understanding the origin and evolution of each gene subfamily within diploid and polyploid species and paves the way for functional studies in cotton species.
• Imprenta:
  • Publisher: Elsevier
  • Date published: 2018
• Source:
  • Título: Plant physiology and biochemistry
  • ISSN: 0981-9428
  • Volume/Número/Paginação/Ano: v. 127, p.169-184, 2018

Informações sobre o DOI: 10.1016/j.plaphy.2018.03.019 (Fonte: oaDOI API)
• Este periódico é de assinatura
• Este artigo NÃO é de acesso aberto
  
• Cor do Acesso Aberto: closed

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• ABNT

  NARDELI, Sarah Muniz et al. Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii). Plant physiology and biochemistry, v. 127, p. 169-184, 2018Tradução . . Disponível em: https://doi.org/10.1016/j.plaphy.2018.03.019. Acesso em: 28 dez. 2025.

• APA

  Nardeli, S. M., Artico, S., Aoyagi, G. M., Moura, S. M. de, Silva, T. da F., Sá, M. F. G. de, et al. (2018). Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii). Plant physiology and biochemistry, 127, 169-184. doi:10.1016/j.plaphy.2018.03.019

• NLM

  Nardeli SM, Artico S, Aoyagi GM, Moura SM de, Silva T da F, Sá MFG de, Romanel EA da C, Ferreira MA. Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii) [Internet]. Plant physiology and biochemistry. 2018 ; 127 169-184.[citado 2025 dez. 28 ] Available from: https://doi.org/10.1016/j.plaphy.2018.03.019

• Vancouver

  Nardeli SM, Artico S, Aoyagi GM, Moura SM de, Silva T da F, Sá MFG de, Romanel EA da C, Ferreira MA. Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii) [Internet]. Plant physiology and biochemistry. 2018 ; 127 169-184.[citado 2025 dez. 28 ] Available from: https://doi.org/10.1016/j.plaphy.2018.03.019

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