Artigo de periodico

Reference gene selection for qRT-PCR in Brazilian-ginseng [Pfaffia glomerata (Spreng.) Pedersen] as affected by various abiotic factors (2019)

• Authors:
  • Batista, Diego Silva
  • Otoni, Wagner Campos
  • Moreira, Viviane Santos
  • Felipe, Sergio Heitor Sousa
  • Fortini, E. A
  • Silva, Tatiane Dulcineia
  • Chagas, Kristhiano
  • Louback, Eliza
  • Romanel, Elisson Antonio
  • Costa, Marcio Gilberto Cardoso
• Autor USP: ROMANEL, ELISSON ANTÔNIO DA COSTA - EEL
• Unidade: EEL
• DOI: 10.1007/s11240-019-01606-6
• Assunto: GENÉTICA
• Keywords: Abiotic conditions; Brazilian ginseng; Gene expression; Quantitative real time; Reference gene
• Language: Inglês
• Abstract: The determination of the best reference gene is essential to improve and guarantee the accuracy of the qPCR technique. Thus, the objective of this work was to evaluate the normalization genes efficiency for qRT-PCR studies of Pfaffia glomerata, a species with marked medicinal and industrial interests due to the production of the phytoecdysteroid 20-hydroxyecdysone (20-E). We have selected four candidates as reference genes in P. glomerata: elongation factor-1α (EF-1α), glyceraldehyde 3-phosphate dehydrogenase (GAPDH), spectrin-like (SPT) and α-tubulin (TUA), and tested their expression stabilities as affected by abiotic factors (salt stress, drought stress, irradiance, photoperiod and CO2 enrichment), using the following methods: NormFinder, geNorm, BestKeeper, ΔCt and RefFinder. Also, the Phantom gene, which belongs to the 20-E biosynthesis pathway, was targeted to validate the most stable reference gene for each abiotic factor. The GAPDH was the most stable gene under all assessed abiotic factors, as well as the most stable when data from all experiments were taken together, which was confirmed by all the software used. The use of more or less stable reference genes for normalization significantly changes the interpretation of the qPCR data, evidencing the importance of choosing the most appropriate housekeeping gene for each expression assay. Based on our results, we recommend GAPDH to be used for normalization of qPCR expression data in P. glomerata in diverse abiotic conditions. This work is the first report on the validation of reference genes in P. glomerata and will be fundamental for further gene expression studies in this important medicinal species.
• Imprenta:
  • Publisher place: Suíça
  • Date published: 2019
• Source:
  • Título: Plant cell tissue and organ culture
  • ISSN: 01676857
  • Volume/Número/Paginação/Ano: v.138, p.97-107, 2019

Informações sobre o DOI: 10.1007/s11240-019-01606-6 (Fonte: oaDOI API)
• Este periódico é de assinatura
• Este artigo NÃO é de acesso aberto
  
• Cor do Acesso Aberto: closed

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How to cite

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• ABNT

  BATISTA, Diego Silva et al. Reference gene selection for qRT-PCR in Brazilian-ginseng [Pfaffia glomerata (Spreng.) Pedersen] as affected by various abiotic factors. Plant cell tissue and organ culture, v. 138, p. 97-107, 2019Tradução . . Disponível em: https://doi.org/10.1007/s11240-019-01606-6. Acesso em: 06 out. 2024.

• APA

  Batista, D. S., Otoni, W. C., Moreira, V. S., Felipe, S. H. S., Fortini, E. A., Silva, T. D., et al. (2019). Reference gene selection for qRT-PCR in Brazilian-ginseng [Pfaffia glomerata (Spreng.) Pedersen] as affected by various abiotic factors. Plant cell tissue and organ culture, 138, 97-107. doi:10.1007/s11240-019-01606-6

• NLM

  Batista DS, Otoni WC, Moreira VS, Felipe SHS, Fortini EA, Silva TD, Chagas K, Louback E, Romanel EA, Costa MGC. Reference gene selection for qRT-PCR in Brazilian-ginseng [Pfaffia glomerata (Spreng.) Pedersen] as affected by various abiotic factors [Internet]. Plant cell tissue and organ culture. 2019 ;138 97-107.[citado 2024 out. 06 ] Available from: https://doi.org/10.1007/s11240-019-01606-6

• Vancouver

  Batista DS, Otoni WC, Moreira VS, Felipe SHS, Fortini EA, Silva TD, Chagas K, Louback E, Romanel EA, Costa MGC. Reference gene selection for qRT-PCR in Brazilian-ginseng [Pfaffia glomerata (Spreng.) Pedersen] as affected by various abiotic factors [Internet]. Plant cell tissue and organ culture. 2019 ;138 97-107.[citado 2024 out. 06 ] Available from: https://doi.org/10.1007/s11240-019-01606-6

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