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Artigo de periodico
Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp (2025)
Kasmanas, Jonas Coelho ; Magnúsdóttir, Stefanía ; Zhang, Junyan; Smalla, Kornelia ; Schloter, Michael ; Stadler, Peter Florian ; Carvalho, André Carlos Ponce de Leon Ferreira de ; Rocha, Ulisses Nunes da
Source: GigaScience. Unidade: ICMC
Subjects: BIOINFORMÁTICA, GENÔMICA, VIRULÊNCIA, RESISTÊNCIA MICROBIANA ÀS DROGAS, BIOTA INTESTINAL, DIETA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
KASMANAS, Jonas Coelho et al. Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp. GigaScience, v. 14, p. 1-17, 2025Tradução . . Disponível em: https://doi.org/10.1093/gigascience/giaf072. Acesso em: 08 nov. 2025.
APA
Kasmanas, J. C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P. F., et al. (2025). Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp. GigaScience, 14, 1-17. doi:10.1093/gigascience/giaf072
NLM
Kasmanas JC, Magnúsdóttir S, Zhang J, Smalla K, Schloter M, Stadler PF, Carvalho ACP de LF de, Rocha UN da. Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp [Internet]. GigaScience. 2025 ; 14 1-17.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/gigascience/giaf072
Vancouver
Kasmanas JC, Magnúsdóttir S, Zhang J, Smalla K, Schloter M, Stadler PF, Carvalho ACP de LF de, Rocha UN da. Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp [Internet]. GigaScience. 2025 ; 14 1-17.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/gigascience/giaf072
Artigo de periodico
The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes (2023)
Santos, Anderson Paulo Avila ; Nata'ala, Muhammad Kabiru ; Kasmanas, Jonas Coelho ; Bartholomäus, Alexander ; Keller-Costa, Tina ; Jurburg, Stephanie D ; Tal, Tamara ; Camarinha-Silva, Amélia ; Saraiva, João Pedro ; Carvalho, André Carlos Ponce de Leon Ferreira de ; Stadler, Peter F ; Sanches, Danilo Sipoli ; Rocha, Ulisses Nunes da
Source: Animal Microbiome. Unidade: ICMC
Subjects: BIOINFORMÁTICA, GENÔMICA, ECOLOGIA MICROBIANA, METADADOS, BASES DE DADOS
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
SANTOS, Anderson Paulo Avila et al. The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes. Animal Microbiome, v. 5, p. 1-13, 2023Tradução . . Disponível em: https://doi.org/10.1186/s42523-023-00267-3. Acesso em: 08 nov. 2025.
APA
Santos, A. P. A., Nata'ala, M. K., Kasmanas, J. C., Bartholomäus, A., Keller-Costa, T., Jurburg, S. D., et al. (2023). The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes. Animal Microbiome, 5, 1-13. doi:10.1186/s42523-023-00267-3
NLM
Santos APA, Nata'ala MK, Kasmanas JC, Bartholomäus A, Keller-Costa T, Jurburg SD, Tal T, Camarinha-Silva A, Saraiva JP, Carvalho ACP de LF de, Stadler PF, Sanches DS, Rocha UN da. The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes [Internet]. Animal Microbiome. 2023 ; 5 1-13.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1186/s42523-023-00267-3
Vancouver
Santos APA, Nata'ala MK, Kasmanas JC, Bartholomäus A, Keller-Costa T, Jurburg SD, Tal T, Camarinha-Silva A, Saraiva JP, Carvalho ACP de LF de, Stadler PF, Sanches DS, Rocha UN da. The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes [Internet]. Animal Microbiome. 2023 ; 5 1-13.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1186/s42523-023-00267-3
Artigo de periodico
MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes (2022)
Nata'ala, Muhammad Kabiru ; Santos, Anderson Paulo Avila ; Kasmanas, Jonas Coelho ; Bartholomäus, Alexander ; Saraiva, João Pedro ; Silva, Sandra Godinho ; Keller-Costa, Tina ; Costa, Rodrigo; Gomes, Newton Carlos Marcial ; Carvalho, André Carlos Ponce de Leon Ferreira de ; Stadler, Peter F ; Sanches, Danilo Sipoli ; Rocha, Ulisses Nunes da
Source: Environmental Microbiome. Unidade: ICMC
Subjects: BIOINFORMÁTICA, GENÔMICA, METADADOS, BANCO DE DADOS, ECOLOGIA MICROBIANA
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
NATA'ALA, Muhammad Kabiru et al. MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes. Environmental Microbiome, v. 17, p. 1-10, 2022Tradução . . Disponível em: https://doi.org/10.1186/s40793-022-00449-7. Acesso em: 08 nov. 2025.
APA
Nata'ala, M. K., Santos, A. P. A., Kasmanas, J. C., Bartholomäus, A., Saraiva, J. P., Silva, S. G., et al. (2022). MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes. Environmental Microbiome, 17, 1-10. doi:10.1186/s40793-022-00449-7
NLM
Nata'ala MK, Santos APA, Kasmanas JC, Bartholomäus A, Saraiva JP, Silva SG, Keller-Costa T, Costa R, Gomes NCM, Carvalho ACP de LF de, Stadler PF, Sanches DS, Rocha UN da. MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes [Internet]. Environmental Microbiome. 2022 ; 17 1-10.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1186/s40793-022-00449-7
Vancouver
Nata'ala MK, Santos APA, Kasmanas JC, Bartholomäus A, Saraiva JP, Silva SG, Keller-Costa T, Costa R, Gomes NCM, Carvalho ACP de LF de, Stadler PF, Sanches DS, Rocha UN da. MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes [Internet]. Environmental Microbiome. 2022 ; 17 1-10.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1186/s40793-022-00449-7
Artigo de periodico
CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems (2021)
Alkhnbashi, Omer S ; Mitrofanov, Alexander; Bonidia, Robson Parmezan ; Raden, Martin ; Tran, Van Dinh ; Eggenhofer, Florian ; Shah, Shiraz A ; Ozturk, Ekrem; Padilha, Victor Alexandre ; Sanches, Danilo Sipoli ; Carvalho, André Carlos Ponce de Leon Ferreira de ; Backofen, Rolf
Source: Nucleic Acids Research. Unidade: ICMC
Subjects: APRENDIZADO COMPUTACIONAL, BIOINFORMÁTICA, GENES
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
ALKHNBASHI, Omer S et al. CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems. Nucleic Acids Research, v. 49, p. w125-w130, 2021Tradução . . Disponível em: https://doi.org/10.1093/nar/gkab456. Acesso em: 08 nov. 2025.
APA
Alkhnbashi, O. S., Mitrofanov, A., Bonidia, R. P., Raden, M., Tran, V. D., Eggenhofer, F., et al. (2021). CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems. Nucleic Acids Research, 49, w125-w130. doi:10.1093/nar/gkab456
NLM
Alkhnbashi OS, Mitrofanov A, Bonidia RP, Raden M, Tran VD, Eggenhofer F, Shah SA, Ozturk E, Padilha VA, Sanches DS, Carvalho ACP de LF de, Backofen R. CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems [Internet]. Nucleic Acids Research. 2021 ; 49 w125-w130.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/nar/gkab456
Vancouver
Alkhnbashi OS, Mitrofanov A, Bonidia RP, Raden M, Tran VD, Eggenhofer F, Shah SA, Ozturk E, Padilha VA, Sanches DS, Carvalho ACP de LF de, Backofen R. CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems [Internet]. Nucleic Acids Research. 2021 ; 49 w125-w130.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/nar/gkab456
Artigo de periodico
Casboundary: automated definition of integral Cas cassettes (2021)
Padilha, Victor Alexandre ; Alkhnbashi, Omer S ; Tran, Van Dinh ; Shah, Shiraz A ; Carvalho, André Carlos Ponce de Leon Ferreira de ; Backofen, Rolf
Source: Bioinformatics. Unidade: ICMC
Subjects: BIOINFORMÁTICA, APRENDIZADO COMPUTACIONAL, GENES
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
PADILHA, Victor Alexandre et al. Casboundary: automated definition of integral Cas cassettes. Bioinformatics, v. 37, n. 10, p. 1352-1359, 2021Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/btaa984. Acesso em: 08 nov. 2025.
APA
Padilha, V. A., Alkhnbashi, O. S., Tran, V. D., Shah, S. A., Carvalho, A. C. P. de L. F. de, & Backofen, R. (2021). Casboundary: automated definition of integral Cas cassettes. Bioinformatics, 37( 10), 1352-1359. doi:10.1093/bioinformatics/btaa984
NLM
Padilha VA, Alkhnbashi OS, Tran VD, Shah SA, Carvalho ACP de LF de, Backofen R. Casboundary: automated definition of integral Cas cassettes [Internet]. Bioinformatics. 2021 ; 37( 10): 1352-1359.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btaa984
Vancouver
Padilha VA, Alkhnbashi OS, Tran VD, Shah SA, Carvalho ACP de LF de, Backofen R. Casboundary: automated definition of integral Cas cassettes [Internet]. Bioinformatics. 2021 ; 37( 10): 1352-1359.[citado 2025 nov. 08 ] Available from: https://doi.org/10.1093/bioinformatics/btaa984

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