ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles - Silva, Tiago Chedraoui; Coetzee, Simon G.; Gull, Nicole; Yao, Lijing; Hazelett, Dennis J.; Noushmehr, Houtan; Lin, De-Chen; Berman, Benjamin P. (Bioinformatics, 2019)