ReP USP - Resultado da busca

Artigo de periodico
Pantheon-DNA: versatile encoding-decoding system with integrated adaptive NGS preprocessing algorithms for DNA data storage (2025)
Leal, Adriano Galindo ; Aoyagi, Thiago Yuji ; Costa-Martins, André Guillherme ; Souza, Diego Trindade de ; Silva, Cristina Maria Ferreira da ; Ueda, Eduardo Takeo ; Parada, Marcelo Gonzaga de Oliveira ; Feitosa, Allan Eduardo ; Fujita, André
Source: Computational and Structural Biotechnology Journal. Unidade: IME
Subjects: ENGENHARIA DE SOFTWARE, BIOINFORMÁTICA
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ABNT
LEAL, Adriano Galindo et al. Pantheon-DNA: versatile encoding-decoding system with integrated adaptive NGS preprocessing algorithms for DNA data storage. Computational and Structural Biotechnology Journal, v. 27, p. 3941-3951, 2025Tradução . . Disponível em: https://doi.org/10.1016/j.csbj.2025.09.002. Acesso em: 15 nov. 2025.
APA
Leal, A. G., Aoyagi, T. Y., Costa-Martins, A. G., Souza, D. T. de, Silva, C. M. F. da, Ueda, E. T., et al. (2025). Pantheon-DNA: versatile encoding-decoding system with integrated adaptive NGS preprocessing algorithms for DNA data storage. Computational and Structural Biotechnology Journal, 27, 3941-3951. doi:10.1016/j.csbj.2025.09.002
NLM
Leal AG, Aoyagi TY, Costa-Martins AG, Souza DT de, Silva CMF da, Ueda ET, Parada MG de O, Feitosa AE, Fujita A. Pantheon-DNA: versatile encoding-decoding system with integrated adaptive NGS preprocessing algorithms for DNA data storage [Internet]. Computational and Structural Biotechnology Journal. 2025 ; 27 3941-3951.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2025.09.002
Vancouver
Leal AG, Aoyagi TY, Costa-Martins AG, Souza DT de, Silva CMF da, Ueda ET, Parada MG de O, Feitosa AE, Fujita A. Pantheon-DNA: versatile encoding-decoding system with integrated adaptive NGS preprocessing algorithms for DNA data storage [Internet]. Computational and Structural Biotechnology Journal. 2025 ; 27 3941-3951.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2025.09.002
Artigo de periodico
Genome mining of metabolic gene clusters in the Rubiaceae family (2024)
Lemos, Samara Mireza Correia de; Paschoal, Alexandre Rossi; Guyot, Romain; Medema, Marnix; Domingues, Douglas Silva
Source: Computational and Structural Biotechnology Journal. Unidade: ESALQ
Subjects: BIOINFORMÁTICA, GENES, GENÔMICA, METABOLISMO VEGETAL
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ABNT
LEMOS, Samara Mireza Correia de et al. Genome mining of metabolic gene clusters in the Rubiaceae family. Computational and Structural Biotechnology Journal, v. 23, p. 22–33, 2024Tradução . . Disponível em: https://doi.org/10.1016/j.csbj.2023.11.034. Acesso em: 15 nov. 2025.
APA
Lemos, S. M. C. de, Paschoal, A. R., Guyot, R., Medema, M., & Domingues, D. S. (2024). Genome mining of metabolic gene clusters in the Rubiaceae family. Computational and Structural Biotechnology Journal, 23, 22–33. doi:10.1016/j.csbj.2023.11.034
NLM
Lemos SMC de, Paschoal AR, Guyot R, Medema M, Domingues DS. Genome mining of metabolic gene clusters in the Rubiaceae family [Internet]. Computational and Structural Biotechnology Journal. 2024 ; 23 22–33.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2023.11.034
Vancouver
Lemos SMC de, Paschoal AR, Guyot R, Medema M, Domingues DS. Genome mining of metabolic gene clusters in the Rubiaceae family [Internet]. Computational and Structural Biotechnology Journal. 2024 ; 23 22–33.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2023.11.034
Artigo de periodico
Temporal progress of gene expression analysis with RNA-Seq data: a review on the relationship between computational methods (2023)
Costa-Silva, Juliana; Domingues, Douglas Silva ; Menotti, David; Hungria, Mariangela; Lopes, Fabrício Martins
Source: Computational and Structural Biotechnology Journal. Unidade: ESALQ
Subjects: BIOINFORMÁTICA, EXPRESSÃO GÊNICA, RNA, SEQUENCIAMENTO GENÉTICO
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ABNT
COSTA-SILVA, Juliana et al. Temporal progress of gene expression analysis with RNA-Seq data: a review on the relationship between computational methods. Computational and Structural Biotechnology Journal, v. 21, p. 86-98, 2023Tradução . . Disponível em: https://doi.org/10.1016/j.csbj.2022.11.051. Acesso em: 15 nov. 2025.
APA
Costa-Silva, J., Domingues, D. S., Menotti, D., Hungria, M., & Lopes, F. M. (2023). Temporal progress of gene expression analysis with RNA-Seq data: a review on the relationship between computational methods. Computational and Structural Biotechnology Journal, 21, 86-98. doi:10.1016/j.csbj.2022.11.051
NLM
Costa-Silva J, Domingues DS, Menotti D, Hungria M, Lopes FM. Temporal progress of gene expression analysis with RNA-Seq data: a review on the relationship between computational methods [Internet]. Computational and Structural Biotechnology Journal. 2023 ; 21 86-98.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2022.11.051
Vancouver
Costa-Silva J, Domingues DS, Menotti D, Hungria M, Lopes FM. Temporal progress of gene expression analysis with RNA-Seq data: a review on the relationship between computational methods [Internet]. Computational and Structural Biotechnology Journal. 2023 ; 21 86-98.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2022.11.051
Artigo de periodico
Parent anion radical formation in coenzyme Q0: Breaking ubiquinone family rules (2023)
Ameixa, J ; Baidoo, E Arthur ; Silva, J. Pereira da ; Oncák, M; Ruivo, Julio ; Varella, Márcio Teixeira do Nascimento ; Silva, F. Ferreira da ; Denifl, S.
Source: Computational and Structural Biotechnology Journal. Unidade: IF
Assunto: ELÉTRONS
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ABNT
AMEIXA, J et al. Parent anion radical formation in coenzyme Q0: Breaking ubiquinone family rules. Computational and Structural Biotechnology Journal, v. 21, p. 346-353, 2023Tradução . . Disponível em: https://doi.org/10.1016/j.csbj.2022.12.01. Acesso em: 15 nov. 2025.
APA
Ameixa, J., Baidoo, E. A., Silva, J. P. da, Oncák, M., Ruivo, J., Varella, M. T. do N., et al. (2023). Parent anion radical formation in coenzyme Q0: Breaking ubiquinone family rules. Computational and Structural Biotechnology Journal, 21, 346-353. doi:10.1016/j.csbj.2022.12.01
NLM
Ameixa J, Baidoo EA, Silva JP da, Oncák M, Ruivo J, Varella MT do N, Silva FF da, Denifl S. Parent anion radical formation in coenzyme Q0: Breaking ubiquinone family rules [Internet]. Computational and Structural Biotechnology Journal. 2023 ; 21 346-353.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2022.12.01
Vancouver
Ameixa J, Baidoo EA, Silva JP da, Oncák M, Ruivo J, Varella MT do N, Silva FF da, Denifl S. Parent anion radical formation in coenzyme Q0: Breaking ubiquinone family rules [Internet]. Computational and Structural Biotechnology Journal. 2023 ; 21 346-353.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2022.12.01
Artigo de periodico
Pan-genomic and comparative analysis of Pediococcus pentosaceus focused on the in silico assessment of pediocin-like bacteriocins (2022)
Blanco, Iago Rodrigues; Pizauro, Lucas José Luduverio ; Almeida, João Victor dos Anjos ; Nóbrega, Carlos Miguel; Varani, Alessandro de Mello ; Oliveira, Ricardo Pinheiro de Souza
Source: Computational and Structural Biotechnology Journal. Unidade: FCF
Subjects: PEPTÍDEOS, GENÔMICA
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ABNT
BLANCO, Iago Rodrigues et al. Pan-genomic and comparative analysis of Pediococcus pentosaceus focused on the in silico assessment of pediocin-like bacteriocins. Computational and Structural Biotechnology Journal, v. 20, p. 5595-5606, 2022Tradução . . Disponível em: https://doi.org/10.1016/j.csbj.2022.09.041. Acesso em: 15 nov. 2025.
APA
Blanco, I. R., Pizauro, L. J. L., Almeida, J. V. dos A., Nóbrega, C. M., Varani, A. de M., & Oliveira, R. P. de S. (2022). Pan-genomic and comparative analysis of Pediococcus pentosaceus focused on the in silico assessment of pediocin-like bacteriocins. Computational and Structural Biotechnology Journal, 20, 5595-5606. doi:10.1016/j.csbj.2022.09.041
NLM
Blanco IR, Pizauro LJL, Almeida JV dos A, Nóbrega CM, Varani A de M, Oliveira RP de S. Pan-genomic and comparative analysis of Pediococcus pentosaceus focused on the in silico assessment of pediocin-like bacteriocins [Internet]. Computational and Structural Biotechnology Journal. 2022 ; 20 5595-5606.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2022.09.041
Vancouver
Blanco IR, Pizauro LJL, Almeida JV dos A, Nóbrega CM, Varani A de M, Oliveira RP de S. Pan-genomic and comparative analysis of Pediococcus pentosaceus focused on the in silico assessment of pediocin-like bacteriocins [Internet]. Computational and Structural Biotechnology Journal. 2022 ; 20 5595-5606.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2022.09.041
Artigo de periodico
Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase (2021)
Briganti, Lorenzo; Capetti, Caio Cesar de Mello; Pellegrini, Vanessa de Oliveira Arnoldi ; Ghio, Silvina; Campos, Eleonora; Nascimento, Alessandro Silva ; Polikarpov, Igor
Source: Computational and Structural Biotechnology Journal. Unidade: IFSC
Subjects: ENZIMAS, CELULOSE, BIOTECNOLOGIA
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ABNT
BRIGANTI, Lorenzo et al. Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase. Computational and Structural Biotechnology Journal, v. 19, p. 1557-1566, 2021Tradução . . Disponível em: https://doi.org/10.1016/j.csbj.2021.03.002. Acesso em: 15 nov. 2025.
APA
Briganti, L., Capetti, C. C. de M., Pellegrini, V. de O. A., Ghio, S., Campos, E., Nascimento, A. S., & Polikarpov, I. (2021). Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase. Computational and Structural Biotechnology Journal, 19, 1557-1566. doi:10.1016/j.csbj.2021.03.002
NLM
Briganti L, Capetti CC de M, Pellegrini V de OA, Ghio S, Campos E, Nascimento AS, Polikarpov I. Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase [Internet]. Computational and Structural Biotechnology Journal. 2021 ; 19 1557-1566.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2021.03.002
Vancouver
Briganti L, Capetti CC de M, Pellegrini V de OA, Ghio S, Campos E, Nascimento AS, Polikarpov I. Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase [Internet]. Computational and Structural Biotechnology Journal. 2021 ; 19 1557-1566.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2021.03.002
Artigo de periodico
Gene-metabolite networks associated with impediment of bone fracture repair in spaceflight (2021)
Chakraborty, Nabarun; Zamarioli, Ariane ; Gautam, Aarti; Campbell, Ross; Mendenhall, Stephen K.; Childress, Paul J.; Dimitrov, George; Sowe, Bintu; Tucker, Aamir; Zhao, Liming; Hammamieh, Rasha; Kacena, Melissa A.
Source: Computational and Structural Biotechnology Journal. Unidade: FMRP
Subjects: OSSO E OSSOS, FRATURAS, GENÔMICA, METABOLÔMICA
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ABNT
CHAKRABORTY, Nabarun et al. Gene-metabolite networks associated with impediment of bone fracture repair in spaceflight. Computational and Structural Biotechnology Journal, v. 19, p. 3507-3520, 2021Tradução . . Disponível em: https://doi.org/10.1016/j.csbj.2021.05.050. Acesso em: 15 nov. 2025.
APA
Chakraborty, N., Zamarioli, A., Gautam, A., Campbell, R., Mendenhall, S. K., Childress, P. J., et al. (2021). Gene-metabolite networks associated with impediment of bone fracture repair in spaceflight. Computational and Structural Biotechnology Journal, 19, 3507-3520. doi:10.1016/j.csbj.2021.05.050
NLM
Chakraborty N, Zamarioli A, Gautam A, Campbell R, Mendenhall SK, Childress PJ, Dimitrov G, Sowe B, Tucker A, Zhao L, Hammamieh R, Kacena MA. Gene-metabolite networks associated with impediment of bone fracture repair in spaceflight [Internet]. Computational and Structural Biotechnology Journal. 2021 ; 19 3507-3520.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2021.05.050
Vancouver
Chakraborty N, Zamarioli A, Gautam A, Campbell R, Mendenhall SK, Childress PJ, Dimitrov G, Sowe B, Tucker A, Zhao L, Hammamieh R, Kacena MA. Gene-metabolite networks associated with impediment of bone fracture repair in spaceflight [Internet]. Computational and Structural Biotechnology Journal. 2021 ; 19 3507-3520.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1016/j.csbj.2021.05.050
Artigo de periodico
Plant cell wall architecture guided design of CBM3-GH11 chimeras with enhanced xylanase activity using a tandem repeat left-handed b-3-prism scaffold (2021)
Pinheiro, Matheus Pinto; Reis, Renata Almeida Garcia; Dupree, Paul; Ward, Richard John
Source: Computational and Structural Biotechnology Journal. Unidade: FFCLRP
Subjects: CARBOIDRATOS, HIDRÓLISE, BIOLOGIA SINTÉTICA
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ABNT
PINHEIRO, Matheus Pinto et al. Plant cell wall architecture guided design of CBM3-GH11 chimeras with enhanced xylanase activity using a tandem repeat left-handed b-3-prism scaffold. Computational and Structural Biotechnology Journal, v. 19, p. 1108-1118, 2021Tradução . . Disponível em: http://dx.doi.org/10.1016/j.csbj.2021.01.011. Acesso em: 15 nov. 2025.
APA
Pinheiro, M. P., Reis, R. A. G., Dupree, P., & Ward, R. J. (2021). Plant cell wall architecture guided design of CBM3-GH11 chimeras with enhanced xylanase activity using a tandem repeat left-handed b-3-prism scaffold. Computational and Structural Biotechnology Journal, 19, 1108-1118. doi:10.1016/j.csbj.2021.01.011
NLM
Pinheiro MP, Reis RAG, Dupree P, Ward RJ. Plant cell wall architecture guided design of CBM3-GH11 chimeras with enhanced xylanase activity using a tandem repeat left-handed b-3-prism scaffold [Internet]. Computational and Structural Biotechnology Journal. 2021 ; 19 1108-1118.[citado 2025 nov. 15 ] Available from: http://dx.doi.org/10.1016/j.csbj.2021.01.011
Vancouver
Pinheiro MP, Reis RAG, Dupree P, Ward RJ. Plant cell wall architecture guided design of CBM3-GH11 chimeras with enhanced xylanase activity using a tandem repeat left-handed b-3-prism scaffold [Internet]. Computational and Structural Biotechnology Journal. 2021 ; 19 1108-1118.[citado 2025 nov. 15 ] Available from: http://dx.doi.org/10.1016/j.csbj.2021.01.011

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