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Filtros : "BIOINFORMÁTICA" "GRUBER, ARTHUR" Limpar

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  • Artigo de periodico

    Integrating sequence- and structure-based similarity metrics for the demarcation of multiple viral taxonomic levels (2025)

    Santos, Igor Chagas ; Souza, Rebecca di Stephano de ; Tolstoy, Igor ; Oliveira, Liliane Santana; Gruber, Arthur

    Source: Viruses. Unidades: ICB, IB, ICMC

    Subjects: PARASITOLOGIA, BIOINFORMÁTICA, EVOLUÇÃO MOLECULAR, GENOMAS, FILOGENIA, VÍRUS, ZOOLOGIA (CLASSIFICAÇÃO)

    Acesso à fonteDOIHow to cite
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    • ABNT

      SANTOS, Igor Chagas et al. Integrating sequence- and structure-based similarity metrics for the demarcation of multiple viral taxonomic levels. Viruses, v. 17, n. 5, p. 27 , 2025Tradução . . Disponível em: https://doi.org/10.3390/v17050642. Acesso em: 15 nov. 2025.

    • APA

      Santos, I. C., Souza, R. di S. de, Tolstoy, I., Oliveira, L. S., & Gruber, A. (2025). Integrating sequence- and structure-based similarity metrics for the demarcation of multiple viral taxonomic levels. Viruses, 17( 5), 27 . doi:10.3390/v17050642

    • NLM

      Santos IC, Souza R di S de, Tolstoy I, Oliveira LS, Gruber A. Integrating sequence- and structure-based similarity metrics for the demarcation of multiple viral taxonomic levels [Internet]. Viruses. 2025 ; 17( 5): 27 .[citado 2025 nov. 15 ] Available from: https://doi.org/10.3390/v17050642

    • Vancouver

      Santos IC, Souza R di S de, Tolstoy I, Oliveira LS, Gruber A. Integrating sequence- and structure-based similarity metrics for the demarcation of multiple viral taxonomic levels [Internet]. Viruses. 2025 ; 17( 5): 27 .[citado 2025 nov. 15 ] Available from: https://doi.org/10.3390/v17050642

  • Parte de monografia/livro

    Rational design of profile hidden Markov models for viral classification and discovery (2021)

    Oliveira, Liliane Santana; Gruber, Arthur

    Source: Bioinformatics [Internet]. Unidade: ICB

    Subjects: PARASITOLOGIA, VIROLOGIA MOLECULAR, MODELOS ANIMAIS DE DOENÇAS, VÍRUS, BIOINFORMÁTICA, DIVERSIDADE GENÉTICA, SEQUENCIAMENTO GENÉTICO, MUTAÇÃO GENÉTICA

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    • ABNT

      OLIVEIRA, Liliane Santana e GRUBER, Arthur. Rational design of profile hidden Markov models for viral classification and discovery. Bioinformatics [Internet]. Tradução . Brisbane: Exon Publication, 2021. p. ca 9. Disponível em: https://doi.org/10.36255/exonpublications.bioinformatics.2021.ch9. Acesso em: 15 nov. 2025.

    • APA

      Oliveira, L. S., & Gruber, A. (2021). Rational design of profile hidden Markov models for viral classification and discovery. In Bioinformatics [Internet] (p. ca 9). Brisbane: Exon Publication. doi:10.36255/exonpublications.bioinformatics.2021.ch9

    • NLM

      Oliveira LS, Gruber A. Rational design of profile hidden Markov models for viral classification and discovery [Internet]. In: Bioinformatics [Internet]. Brisbane: Exon Publication; 2021. p. ca 9.[citado 2025 nov. 15 ] Available from: https://doi.org/10.36255/exonpublications.bioinformatics.2021.ch9

    • Vancouver

      Oliveira LS, Gruber A. Rational design of profile hidden Markov models for viral classification and discovery [Internet]. In: Bioinformatics [Internet]. Brisbane: Exon Publication; 2021. p. ca 9.[citado 2025 nov. 15 ] Available from: https://doi.org/10.36255/exonpublications.bioinformatics.2021.ch9

  • Artigo de periodico

    Bioinformatics meets virology: the european virus Bioinformatics Center’s Second Annual Meeting (2018)

    Ibrahim, Bashar; Arkhipova, Ksenia; Andeweg, Arno C.; Posada-Céspedes, Susana; Enault, François; Gruber, Arthur ; Koonin, Eugene V.; Kupczok, Anne; Lemey, Philippe; McHardy, Alice C.; McMahon, Dino P.; Pickett, Brett E.; Robertson, David L.; Scheuermann, Richard H.; Zhernakova, Alexandra; Zwart, Mark P.; Schönhuth, Alexander; Dutilh, Bas E.; Marz, Manja

    Source: Viruses. Unidade: ICB

    Subjects: PARASITOLOGIA, BIOINFORMÁTICA, VÍRUS

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    • ABNT

      IBRAHIM, Bashar et al. Bioinformatics meets virology: the european virus Bioinformatics Center’s Second Annual Meeting. Viruses, v. 10, n. 5, p. 1-19, 2018Tradução . . Disponível em: https://doi.org/10.3390/v10050256. Acesso em: 15 nov. 2025.

    • APA

      Ibrahim, B., Arkhipova, K., Andeweg, A. C., Posada-Céspedes, S., Enault, F., Gruber, A., et al. (2018). Bioinformatics meets virology: the european virus Bioinformatics Center’s Second Annual Meeting. Viruses, 10( 5), 1-19. doi:10.3390/v10050256

    • NLM

      Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, Zwart MP, Schönhuth A, Dutilh BE, Marz M. Bioinformatics meets virology: the european virus Bioinformatics Center’s Second Annual Meeting [Internet]. Viruses. 2018 ; 10( 5): 1-19.[citado 2025 nov. 15 ] Available from: https://doi.org/10.3390/v10050256

    • Vancouver

      Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, Zwart MP, Schönhuth A, Dutilh BE, Marz M. Bioinformatics meets virology: the european virus Bioinformatics Center’s Second Annual Meeting [Internet]. Viruses. 2018 ; 10( 5): 1-19.[citado 2025 nov. 15 ] Available from: https://doi.org/10.3390/v10050256

  • Artigo de periodico

    GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data (2016)

    Alves, João Marcelo Pereira ; Oliveira, Andre L. de; Sandberg, Tatiana Orli Milkewitz ; Moreno-Gallego, Jaime L; Toledo, Marcelo A. F. de; Moura, Elisabeth M. M. de; Oliveira, Liliane S; Durham, Alan Mitchell ; Mehnert, Dolores Ursula; Zanotto, Paolo Marinho de Andrade ; Reyes, Alejandro; Gruber, Arthur

    Source: Frontiers in Microbiology. Unidades: ICB, IME, IB

    Subjects: BIOINFORMÁTICA, PROCESSOS DE MARKOV

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    • ABNT

      ALVES, João Marcelo Pereira et al. GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data. Frontiers in Microbiology, v. 7, n. article º 269, p. 15 , 2016Tradução . . Disponível em: https://doi.org/10.3389/fmicb.2016.00269. Acesso em: 15 nov. 2025.

    • APA

      Alves, J. M. P., Oliveira, A. L. de, Sandberg, T. O. M., Moreno-Gallego, J. L., Toledo, M. A. F. de, Moura, E. M. M. de, et al. (2016). GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data. Frontiers in Microbiology, 7( article º 269), 15 . doi:10.3389/fmicb.2016.00269

    • NLM

      Alves JMP, Oliveira AL de, Sandberg TOM, Moreno-Gallego JL, Toledo MAF de, Moura EMM de, Oliveira LS, Durham AM, Mehnert DU, Zanotto PM de A, Reyes A, Gruber A. GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data [Internet]. Frontiers in Microbiology. 2016 ; 7( article º 269): 15 .[citado 2025 nov. 15 ] Available from: https://doi.org/10.3389/fmicb.2016.00269

    • Vancouver

      Alves JMP, Oliveira AL de, Sandberg TOM, Moreno-Gallego JL, Toledo MAF de, Moura EMM de, Oliveira LS, Durham AM, Mehnert DU, Zanotto PM de A, Reyes A, Gruber A. GenSeed-HMM: a tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data [Internet]. Frontiers in Microbiology. 2016 ; 7( article º 269): 15 .[citado 2025 nov. 15 ] Available from: https://doi.org/10.3389/fmicb.2016.00269

  • Parte de monografia/livro-apres/pref/posf

    This book is the result of a long process that began with a series of Latin American Bioinformatics Training Courses for Tropical Disease Research. [Prefácio] (2008)

    Gruber, Arthur ; Durham, Alan Mitchell ; Huynh, Chuong

    Source: Bioinformatics in tropical disease research: a practical and case-study approach. Unidades: ICB, IME

    Assunto: BIOINFORMÁTICA

    Acesso à fonteHow to cite
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    • ABNT

      GRUBER, Arthur e DURHAM, Alan Mitchell e HUYNH, Chuong. This book is the result of a long process that began with a series of Latin American Bioinformatics Training Courses for Tropical Disease Research. [Prefácio]. Bioinformatics in tropical disease research: a practical and case-study approach. Bethesda: National Center for Biotechnology Information. Disponível em: https://www.ncbi.nlm.nih.gov/books/NBK6826/pdf/Bookshelf_NBK6826.pdf. Acesso em: 15 nov. 2025. , 2008

    • APA

      Gruber, A., Durham, A. M., & Huynh, C. (2008). This book is the result of a long process that began with a series of Latin American Bioinformatics Training Courses for Tropical Disease Research. [Prefácio]. Bioinformatics in tropical disease research: a practical and case-study approach. Bethesda: National Center for Biotechnology Information. Recuperado de https://www.ncbi.nlm.nih.gov/books/NBK6826/pdf/Bookshelf_NBK6826.pdf

    • NLM

      Gruber A, Durham AM, Huynh C. This book is the result of a long process that began with a series of Latin American Bioinformatics Training Courses for Tropical Disease Research. [Prefácio] [Internet]. Bioinformatics in tropical disease research: a practical and case-study approach. 2008 ;[citado 2025 nov. 15 ] Available from: https://www.ncbi.nlm.nih.gov/books/NBK6826/pdf/Bookshelf_NBK6826.pdf

    • Vancouver

      Gruber A, Durham AM, Huynh C. This book is the result of a long process that began with a series of Latin American Bioinformatics Training Courses for Tropical Disease Research. [Prefácio] [Internet]. Bioinformatics in tropical disease research: a practical and case-study approach. 2008 ;[citado 2025 nov. 15 ] Available from: https://www.ncbi.nlm.nih.gov/books/NBK6826/pdf/Bookshelf_NBK6826.pdf

  • Monografia/livro

    Bioinformatics in tropical disease research: a practical and case-study approach (2008)

    Gruber, Arthur ; Durham, Alan Mitchell ; Huynh, Chuong; Portillo, Hernando A del

    Unidades: ICB, IME

    Subjects: BIOINFORMÁTICA, BANCO DE DADOS

    Acesso à fonteHow to cite
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    • ABNT

      GRUBER, Arthur et al. Bioinformatics in tropical disease research: a practical and case-study approach. . Bethesda: National Center for Biotechnology Information. Disponível em: https://www.ncbi.nlm.nih.gov/books/NBK6818/pdf/Bookshelf_NBK6818.pdf. Acesso em: 15 nov. 2025. , 2008

    • APA

      Gruber, A., Durham, A. M., Huynh, C., & Portillo, H. A. del. (2008). Bioinformatics in tropical disease research: a practical and case-study approach. Bethesda: National Center for Biotechnology Information. Recuperado de https://www.ncbi.nlm.nih.gov/books/NBK6818/pdf/Bookshelf_NBK6818.pdf

    • NLM

      Gruber A, Durham AM, Huynh C, Portillo HA del. Bioinformatics in tropical disease research: a practical and case-study approach [Internet]. 2008 ;[citado 2025 nov. 15 ] Available from: https://www.ncbi.nlm.nih.gov/books/NBK6818/pdf/Bookshelf_NBK6818.pdf

    • Vancouver

      Gruber A, Durham AM, Huynh C, Portillo HA del. Bioinformatics in tropical disease research: a practical and case-study approach [Internet]. 2008 ;[citado 2025 nov. 15 ] Available from: https://www.ncbi.nlm.nih.gov/books/NBK6818/pdf/Bookshelf_NBK6818.pdf

  • Artigo de periodico

    EGene: a configurable pipeline generation system for automated sequence analysis (2005)

    Durham, Alan Mitchell ; Kashiwabara, André Yoshiaki; Matsunaga, Fernando Tadashi Guerrera; Ahagon, P. H.; Rainone, Flávia; Varuzza, Leonardo; Gruber, Arthur

    Source: Bioinformatics. Unidades: IME, FMVZ

    Subjects: COMPUTAÇÃO APLICADA, BIOINFORMÁTICA

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    • ABNT

      DURHAM, Alan Mitchell et al. EGene: a configurable pipeline generation system for automated sequence analysis. Bioinformatics, v. 21, n. 12, p. 15 2812–2813, 2005Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/bti424. Acesso em: 15 nov. 2025.

    • APA

      Durham, A. M., Kashiwabara, A. Y., Matsunaga, F. T. G., Ahagon, P. H., Rainone, F., Varuzza, L., & Gruber, A. (2005). EGene: a configurable pipeline generation system for automated sequence analysis. Bioinformatics, 21( 12), 15 2812–2813. doi:10.1093/bioinformatics/bti424

    • NLM

      Durham AM, Kashiwabara AY, Matsunaga FTG, Ahagon PH, Rainone F, Varuzza L, Gruber A. EGene: a configurable pipeline generation system for automated sequence analysis [Internet]. Bioinformatics. 2005 ; 21( 12): 15 2812–2813.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1093/bioinformatics/bti424

    • Vancouver

      Durham AM, Kashiwabara AY, Matsunaga FTG, Ahagon PH, Rainone F, Varuzza L, Gruber A. EGene: a configurable pipeline generation system for automated sequence analysis [Internet]. Bioinformatics. 2005 ; 21( 12): 15 2812–2813.[citado 2025 nov. 15 ] Available from: https://doi.org/10.1093/bioinformatics/bti424
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