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Artigo de periodico
Gene co‐expression networks highlight key nodes associated with ammonium nitrate in sugarcane (2025)
Pérez, Jorge Mario Muñoz ; Bassi, Denis; Mattiello, Lucia ; Menossi, Marcelo ; Pachón, Diego Mauricio Riaño
Source: Physiologia Plantarum. Unidades: CENA, ESALQ
Subjects: CANA-DE-AÇÚCAR, NITROGÊNIO, GENÓTIPOS, METABOLISMO, CARBONO, GENES
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PÉREZ, Jorge Mario Muñoz et al. Gene co‐expression networks highlight key nodes associated with ammonium nitrate in sugarcane. Physiologia Plantarum, v. 177, n. 6, p. 1-15, 2025Tradução . . Disponível em: https://doi.org/10.1111/ppl.70612. Acesso em: 28 nov. 2025.
APA
Pérez, J. M. M., Bassi, D., Mattiello, L., Menossi, M., & Pachón, D. M. R. (2025). Gene co‐expression networks highlight key nodes associated with ammonium nitrate in sugarcane. Physiologia Plantarum, 177( 6), 1-15. doi:10.1111/ppl.70612
NLM
Pérez JMM, Bassi D, Mattiello L, Menossi M, Pachón DMR. Gene co‐expression networks highlight key nodes associated with ammonium nitrate in sugarcane [Internet]. Physiologia Plantarum. 2025 ; 177( 6): 1-15.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1111/ppl.70612
Vancouver
Pérez JMM, Bassi D, Mattiello L, Menossi M, Pachón DMR. Gene co‐expression networks highlight key nodes associated with ammonium nitrate in sugarcane [Internet]. Physiologia Plantarum. 2025 ; 177( 6): 1-15.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1111/ppl.70612
Artigo de periodico
Selected cachaça yeast strains share a genomic profile related to traits relevant to industrial fermentation processes (2024)
Campos, Anna Clara Silva ; Araújo, Thalita Macedo ; Moraes, Lauro Ângelo Gonçalves de ; Santos, Renato Augusto Corrêa dos ; Goldman, Gustavo Henrique ; Riaño-Pachón, Diego Mauricio ; Oliveira, Juliana Velasco de Castro; Squina, Fabio Marcio ; Castro, Ieso de Miranda ; Trópia, Maria José Magalhães; Cunha, Aureliano Claret da ; Rosse, Izinara Cruz ; Brandão, Rogelio Lopes
Source: Applied and Environmental Microbiology. Unidades: FCFRP, CENA
Subjects: BIOTECNOLOGIA, INDÚSTRIA SUCRO-ALCOOLEIRA, FERMENTAÇÃO ALCOÓLICA, CACHAÇA, LEVEDURAS, CERVEJA, SACCHAROMYCES
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CAMPOS, Anna Clara Silva et al. Selected cachaça yeast strains share a genomic profile related to traits relevant to industrial fermentation processes. Applied and Environmental Microbiology, v. 90, n. 1, p. 1-17, 2024Tradução . . Disponível em: https://doi.org/10.1128/aem.01759-23. Acesso em: 28 nov. 2025.
APA
Campos, A. C. S., Araújo, T. M., Moraes, L. Â. G. de, Santos, R. A. C. dos, Goldman, G. H., Riaño-Pachón, D. M., et al. (2024). Selected cachaça yeast strains share a genomic profile related to traits relevant to industrial fermentation processes. Applied and Environmental Microbiology, 90( 1), 1-17. doi:10.1128/aem.01759-23
NLM
Campos ACS, Araújo TM, Moraes LÂG de, Santos RAC dos, Goldman GH, Riaño-Pachón DM, Oliveira JV de C, Squina FM, Castro I de M, Trópia MJM, Cunha AC da, Rosse IC, Brandão RL. Selected cachaça yeast strains share a genomic profile related to traits relevant to industrial fermentation processes [Internet]. Applied and Environmental Microbiology. 2024 ; 90( 1): 1-17.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1128/aem.01759-23
Vancouver
Campos ACS, Araújo TM, Moraes LÂG de, Santos RAC dos, Goldman GH, Riaño-Pachón DM, Oliveira JV de C, Squina FM, Castro I de M, Trópia MJM, Cunha AC da, Rosse IC, Brandão RL. Selected cachaça yeast strains share a genomic profile related to traits relevant to industrial fermentation processes [Internet]. Applied and Environmental Microbiology. 2024 ; 90( 1): 1-17.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1128/aem.01759-23
Artigo de periodico
Ecological transcriptomics reveals stress response pathways of a ground‐herb species in a waterlogging gradient of Amazonian riparian forests (2024)
Palma-Silva, Clarisse ; Mortati, Amanda Frederico ; Chaves, Cleber Juliano Neves ; Leal, Bárbara Simões Santos ; Ribeiro, Rafael Vasconcelos ; Pinheiro, Fabio ; Ferro, Milene ; Riaño-Pachón, Diego Mauricio ; Mattos, Jacqueline Salvi de ; Tavares, Marília Manupella ; Aecyo, Paulo ; Cacossi, Tami da Costa ; Schöngart, Jochen ; Piedade, Maria Teresa Fernandez ; André, Thiago
Source: Molecular Ecology. Unidade: CENA
Subjects: FLORESTAS, EXPRESSÃO GÊNICA, BIOMA, GENÉTICA DE POPULAÇÕES
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PALMA-SILVA, Clarisse et al. Ecological transcriptomics reveals stress response pathways of a ground‐herb species in a waterlogging gradient of Amazonian riparian forests. Molecular Ecology, p. 1-15, 2024Tradução . . Disponível em: https://doi.org/10.1111/mec.17437. Acesso em: 28 nov. 2025.
APA
Palma-Silva, C., Mortati, A. F., Chaves, C. J. N., Leal, B. S. S., Ribeiro, R. V., Pinheiro, F., et al. (2024). Ecological transcriptomics reveals stress response pathways of a ground‐herb species in a waterlogging gradient of Amazonian riparian forests. Molecular Ecology, 1-15. doi:10.1111/mec.17437
NLM
Palma-Silva C, Mortati AF, Chaves CJN, Leal BS S, Ribeiro RV, Pinheiro F, Ferro M, Riaño-Pachón DM, Mattos JS de, Tavares MM, Aecyo P, Cacossi T da C, Schöngart J, Piedade MTF, André T. Ecological transcriptomics reveals stress response pathways of a ground‐herb species in a waterlogging gradient of Amazonian riparian forests [Internet]. Molecular Ecology. 2024 ; 1-15.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1111/mec.17437
Vancouver
Palma-Silva C, Mortati AF, Chaves CJN, Leal BS S, Ribeiro RV, Pinheiro F, Ferro M, Riaño-Pachón DM, Mattos JS de, Tavares MM, Aecyo P, Cacossi T da C, Schöngart J, Piedade MTF, André T. Ecological transcriptomics reveals stress response pathways of a ground‐herb species in a waterlogging gradient of Amazonian riparian forests [Internet]. Molecular Ecology. 2024 ; 1-15.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1111/mec.17437
Artigo de periodico
Bioinformatic insights into sugar signaling pathways in sugarcane growth (2024)
Oliveira, Lauana Pereira de ; Pereira, João Pedro de Jesus ; Navarro, Bruno Viana ; Martins, Marina Camara Mattos ; Riaño-Pachón, Diego Mauricio ; Buckeridge, Marcos
Source: Scientific Reports. Unidades: CENA, IB
Subjects: CANA-DE-AÇÚCAR, CARBOIDRATOS, BIOINFORMÁTICA, CINÉTICA, SACAROSE, AMINOÁCIDOS, BIOTECNOLOGIA DE PLANTAS
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OLIVEIRA, Lauana Pereira de et al. Bioinformatic insights into sugar signaling pathways in sugarcane growth. Scientific Reports, v. 14, p. 1-14, 2024Tradução . . Disponível em: https://doi.org/10.1038/s41598-024-75220-8. Acesso em: 28 nov. 2025.
APA
Oliveira, L. P. de, Pereira, J. P. de J., Navarro, B. V., Martins, M. C. M., Riaño-Pachón, D. M., & Buckeridge, M. (2024). Bioinformatic insights into sugar signaling pathways in sugarcane growth. Scientific Reports, 14, 1-14. doi:10.1038/s41598-024-75220-8
NLM
Oliveira LP de, Pereira JP de J, Navarro BV, Martins MCM, Riaño-Pachón DM, Buckeridge M. Bioinformatic insights into sugar signaling pathways in sugarcane growth [Internet]. Scientific Reports. 2024 ; 14 1-14.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1038/s41598-024-75220-8
Vancouver
Oliveira LP de, Pereira JP de J, Navarro BV, Martins MCM, Riaño-Pachón DM, Buckeridge M. Bioinformatic insights into sugar signaling pathways in sugarcane growth [Internet]. Scientific Reports. 2024 ; 14 1-14.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1038/s41598-024-75220-8
Artigo de periodico
Making sense of complexity: Advances in bioinformatics for plant biology (2023)
Emelianova, Katie ; Riaño-Pachón, Diego Mauricio ; Torres Jimenez, Maria Fernanda
Source: Applications in Plant Sciences. Unidade: CENA
Subjects: BIOINFORMÁTICA, BIOLOGIA VEGETAL, SEGURANÇA ALIMENTAR, BIOTECNOLOGIA DE PLANTAS
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EMELIANOVA, Katie e RIAÑO-PACHÓN, Diego Mauricio e TORRES JIMENEZ, Maria Fernanda. Making sense of complexity: Advances in bioinformatics for plant biology. Applications in Plant Sciences, v. 11, 2023Tradução . . Disponível em: https://doi.org/10.1002/aps3.11538. Acesso em: 28 nov. 2025.
APA
Emelianova, K., Riaño-Pachón, D. M., & Torres Jimenez, M. F. (2023). Making sense of complexity: Advances in bioinformatics for plant biology. Applications in Plant Sciences, 11. doi:10.1002/aps3.11538
NLM
Emelianova K, Riaño-Pachón DM, Torres Jimenez MF. Making sense of complexity: Advances in bioinformatics for plant biology [Internet]. Applications in Plant Sciences. 2023 ; 11[citado 2025 nov. 28 ] Available from: https://doi.org/10.1002/aps3.11538
Vancouver
Emelianova K, Riaño-Pachón DM, Torres Jimenez MF. Making sense of complexity: Advances in bioinformatics for plant biology [Internet]. Applications in Plant Sciences. 2023 ; 11[citado 2025 nov. 28 ] Available from: https://doi.org/10.1002/aps3.11538
Artigo de periodico
Amazon Biobank: a collaborative genetic database for bioeconomy development (2023)
Kimura, Leonardo T. ; Andrade, Ewerton Rodrigues ; Nobre, Ismael; Nobre, Carlos A; Medeiros, Bruno A. S; Riaño-Pachón, Diego Mauricio ; Shiraishi, Felipe Kenzo ; Carvalho, Tereza Cristina Melo de Brito ; Simplicio Junior, Marcos Antonio
Source: Functional and Integrative Genomics. Unidades: IEA, CENA, EP
Subjects: BIODIVERSIDADE, DNA, BANCO DE DADOS, GENÔMICA
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KIMURA, Leonardo T. et al. Amazon Biobank: a collaborative genetic database for bioeconomy development. Functional and Integrative Genomics, v. 23, 2023Tradução . . Disponível em: https://doi.org/10.1007/s10142-023-01015-1. Acesso em: 28 nov. 2025.
APA
Kimura, L. T., Andrade, E. R., Nobre, I., Nobre, C. A., Medeiros, B. A. S., Riaño-Pachón, D. M., et al. (2023). Amazon Biobank: a collaborative genetic database for bioeconomy development. Functional and Integrative Genomics, 23. doi:10.1007/s10142-023-01015-1
NLM
Kimura LT, Andrade ER, Nobre I, Nobre CA, Medeiros BAS, Riaño-Pachón DM, Shiraishi FK, Carvalho TCM de B, Simplicio Junior MA. Amazon Biobank: a collaborative genetic database for bioeconomy development [Internet]. Functional and Integrative Genomics. 2023 ; 23[citado 2025 nov. 28 ] Available from: https://doi.org/10.1007/s10142-023-01015-1
Vancouver
Kimura LT, Andrade ER, Nobre I, Nobre CA, Medeiros BAS, Riaño-Pachón DM, Shiraishi FK, Carvalho TCM de B, Simplicio Junior MA. Amazon Biobank: a collaborative genetic database for bioeconomy development [Internet]. Functional and Integrative Genomics. 2023 ; 23[citado 2025 nov. 28 ] Available from: https://doi.org/10.1007/s10142-023-01015-1
Artigo de periodico
Identification of Active Compounds against Melanoma Growth by Virtual Screening for Non-Classical Human DHFR Inhibitors (2022)
Vásquez, Andrés Felipe; Gómez, Luis Alberto ; González Barrios, Andrés; Riaño-Pachón, Diego Mauricio
Source: International Journal of Molecular Sciences. Unidade: CENA
Subjects: FÁRMACOS, MELANOMA, FARMACOTERAPIA, PROTEÍNAS
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VÁSQUEZ, Andrés Felipe et al. Identification of Active Compounds against Melanoma Growth by Virtual Screening for Non-Classical Human DHFR Inhibitors. International Journal of Molecular Sciences, v. 23, 2022Tradução . . Disponível em: https://doi.org/10.3390/ijms232213946. Acesso em: 28 nov. 2025.
APA
Vásquez, A. F., Gómez, L. A., González Barrios, A., & Riaño-Pachón, D. M. (2022). Identification of Active Compounds against Melanoma Growth by Virtual Screening for Non-Classical Human DHFR Inhibitors. International Journal of Molecular Sciences, 23. doi:10.3390/ijms232213946
NLM
Vásquez AF, Gómez LA, González Barrios A, Riaño-Pachón DM. Identification of Active Compounds against Melanoma Growth by Virtual Screening for Non-Classical Human DHFR Inhibitors [Internet]. International Journal of Molecular Sciences. 2022 ; 23[citado 2025 nov. 28 ] Available from: https://doi.org/10.3390/ijms232213946
Vancouver
Vásquez AF, Gómez LA, González Barrios A, Riaño-Pachón DM. Identification of Active Compounds against Melanoma Growth by Virtual Screening for Non-Classical Human DHFR Inhibitors [Internet]. International Journal of Molecular Sciences. 2022 ; 23[citado 2025 nov. 28 ] Available from: https://doi.org/10.3390/ijms232213946
Artigo de periodico
Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane (2022)
Oliveira, Lauana P. de ; Navarro, Bruno Viana ; Pereira, João Pedro de Jesus ; Lopes, Adriana Rios ; Martins, Marina C. M ; Riaño-Pachón, Diego Mauricio ; Buckeridge, Marcos
Source: Scientific Reports. Unidades: CENA, IB
Subjects: BIOINFORMÁTICA, CANA-DE-AÇÚCAR, COMPUTAÇÃO EVOLUTIVA, ENZIMAS
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OLIVEIRA, Lauana P. de et al. Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane. Scientific Reports, v. 12, 2022Tradução . . Disponível em: https://doi.org/10.1038/s41598-022-11508-x. Acesso em: 28 nov. 2025.
APA
Oliveira, L. P. de, Navarro, B. V., Pereira, J. P. de J., Lopes, A. R., Martins, M. C. M., Riaño-Pachón, D. M., & Buckeridge, M. (2022). Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane. Scientific Reports, 12. doi:10.1038/s41598-022-11508-x
NLM
Oliveira LP de, Navarro BV, Pereira JP de J, Lopes AR, Martins MCM, Riaño-Pachón DM, Buckeridge M. Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane [Internet]. Scientific Reports. 2022 ; 12[citado 2025 nov. 28 ] Available from: https://doi.org/10.1038/s41598-022-11508-x
Vancouver
Oliveira LP de, Navarro BV, Pereira JP de J, Lopes AR, Martins MCM, Riaño-Pachón DM, Buckeridge M. Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane [Internet]. Scientific Reports. 2022 ; 12[citado 2025 nov. 28 ] Available from: https://doi.org/10.1038/s41598-022-11508-x
Artigo de periodico
High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees (2022)
González-Sayer, Sandra ; Oggenfuss, Ursula ; García, Ibonne ; Aristizabal, Fabio ; Croll, Daniel ; Riaño-Pachón, Diego Mauricio
Source: Genetics and Molecular Biology. Unidade: CENA
Subjects: BORRACHA, GENOMAS, FUNGOS FITOPATOGÊNICOS, SEQUENCIAMENTO GENÉTICO
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GONZÁLEZ-SAYER, Sandra et al. High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees. Genetics and Molecular Biology, v. 45, n. 1, 2022Tradução . . Disponível em: https://doi.org/10.1590/1678-4685-GMB-2021-0051. Acesso em: 28 nov. 2025.
APA
González-Sayer, S., Oggenfuss, U., García, I., Aristizabal, F., Croll, D., & Riaño-Pachón, D. M. (2022). High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees. Genetics and Molecular Biology, 45( 1). doi:10.1590/1678-4685-GMB-2021-0051
NLM
González-Sayer S, Oggenfuss U, García I, Aristizabal F, Croll D, Riaño-Pachón DM. High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees [Internet]. Genetics and Molecular Biology. 2022 ; 45( 1):[citado 2025 nov. 28 ] Available from: https://doi.org/10.1590/1678-4685-GMB-2021-0051
Vancouver
González-Sayer S, Oggenfuss U, García I, Aristizabal F, Croll D, Riaño-Pachón DM. High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees [Internet]. Genetics and Molecular Biology. 2022 ; 45( 1):[citado 2025 nov. 28 ] Available from: https://doi.org/10.1590/1678-4685-GMB-2021-0051
Artigo de periodico
Infection by Moniliophthora perniciosa reprograms tomato Micro-Tom physiology, establishes a sink, and increases secondary cell wall synthesis (2022)
Paschoal, Daniele ; Costa, Juliana Leles ; Silva, Eder Maeques da ; Silva, Fabia Barbosa da ; Capelin, Diogo ; Ometto, Vitor; Aricetti, Juliana A.; Carvalho, Gabriel G. ; Pimpinato, Rodrigo Floriano ; Oliveira, Ricardo Ferraz de ; Carrera, Esther ; Díaz, Isabel López ; Rossi, Monica Lanzoni ; Tornisielo, Valdemar Luiz ; Caldana, Camila ; Riaño-Pachón, Diego Mauricio ; Igor Cesarino ; Teixeira, Paulo Jose Pereira Lima ; Figueira, Antonio Vargas de Oliveira
Source: Journal of Experimental Botany. Unidades: CENA, ESALQ, IB
Subjects: CACAU, CITOCININAS, FUNGOS FITOPATOGÊNICOS, LIGNINA, PAREDE CELULAR VEGETAL, TOMATE, VASSOURA-DE-BRUXA
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PASCHOAL, Daniele et al. Infection by Moniliophthora perniciosa reprograms tomato Micro-Tom physiology, establishes a sink, and increases secondary cell wall synthesis. Journal of Experimental Botany, v. 73, n. 11, 2022Tradução . . Disponível em: https://doi.org/10.1093/jxb/erac057. Acesso em: 28 nov. 2025.
APA
Paschoal, D., Costa, J. L., Silva, E. M. da, Silva, F. B. da, Capelin, D., Ometto, V., et al. (2022). Infection by Moniliophthora perniciosa reprograms tomato Micro-Tom physiology, establishes a sink, and increases secondary cell wall synthesis. Journal of Experimental Botany, 73( 11). doi:10.1093/jxb/erac057
NLM
Paschoal D, Costa JL, Silva EM da, Silva FB da, Capelin D, Ometto V, Aricetti JA, Carvalho GG, Pimpinato RF, Oliveira RF de, Carrera E, Díaz IL, Rossi ML, Tornisielo VL, Caldana C, Riaño-Pachón DM, Igor Cesarino, Teixeira PJPL, Figueira AV de O. Infection by Moniliophthora perniciosa reprograms tomato Micro-Tom physiology, establishes a sink, and increases secondary cell wall synthesis [Internet]. Journal of Experimental Botany. 2022 ; 73( 11):[citado 2025 nov. 28 ] Available from: https://doi.org/10.1093/jxb/erac057
Vancouver
Paschoal D, Costa JL, Silva EM da, Silva FB da, Capelin D, Ometto V, Aricetti JA, Carvalho GG, Pimpinato RF, Oliveira RF de, Carrera E, Díaz IL, Rossi ML, Tornisielo VL, Caldana C, Riaño-Pachón DM, Igor Cesarino, Teixeira PJPL, Figueira AV de O. Infection by Moniliophthora perniciosa reprograms tomato Micro-Tom physiology, establishes a sink, and increases secondary cell wall synthesis [Internet]. Journal of Experimental Botany. 2022 ; 73( 11):[citado 2025 nov. 28 ] Available from: https://doi.org/10.1093/jxb/erac057
Artigo de periodico
CoCoView - A codon conservation viewer via sequence logos (2022)
Estevam, Beatriz Rodrigues ; Riaño-Pachón, Diego Mauricio
Source: MethodsX. Unidade: CENA
Subjects: BIOINFORMÁTICA, ANÁLISE SEQUENCIAL, NUCLEOTÍDEOS, AMINOÁCIDOS
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ESTEVAM, Beatriz Rodrigues e RIAÑO-PACHÓN, Diego Mauricio. CoCoView - A codon conservation viewer via sequence logos. MethodsX, v. 9, 2022Tradução . . Disponível em: https://doi.org/10.1016/j.mex.2022.101803. Acesso em: 28 nov. 2025.
APA
Estevam, B. R., & Riaño-Pachón, D. M. (2022). CoCoView - A codon conservation viewer via sequence logos. MethodsX, 9. doi:10.1016/j.mex.2022.101803
NLM
Estevam BR, Riaño-Pachón DM. CoCoView - A codon conservation viewer via sequence logos [Internet]. MethodsX. 2022 ;9[citado 2025 nov. 28 ] Available from: https://doi.org/10.1016/j.mex.2022.101803
Vancouver
Estevam BR, Riaño-Pachón DM. CoCoView - A codon conservation viewer via sequence logos [Internet]. MethodsX. 2022 ;9[citado 2025 nov. 28 ] Available from: https://doi.org/10.1016/j.mex.2022.101803
Artigo de periodico
Root nitrate uptake in sugarcane (Saccharum spp.) is modulated by transcriptional and presumably posttranscriptional regulation of the NRT2.1/NRT3.1 transport system (2022)
Lima, Joni Esrom ; Serezino, Luis Henrique Damasceno ; Alves, Melissa K.; Tagliaferro, André L.; Vitti, Marielle; Creste, Silvana ; Riaño-Pachón, Diego Mauricio ; Santos, Renato V.; Figueira, Antonio Vargas de Oliveira
Source: Molecular Genetics and Genomics. Unidades: CENA, ESALQ
Subjects: BIOCOMBUSTÍVEIS, BIOMASSA, EXPRESSÃO GÊNICA, TRANSCRIÇÃO GÊNICA
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LIMA, Joni Esrom et al. Root nitrate uptake in sugarcane (Saccharum spp.) is modulated by transcriptional and presumably posttranscriptional regulation of the NRT2.1/NRT3.1 transport system. Molecular Genetics and Genomics, v. 297, p. 1403-1421, 2022Tradução . . Disponível em: https://doi.org/10.1007/s00438-022-01929-8. Acesso em: 28 nov. 2025.
APA
Lima, J. E., Serezino, L. H. D., Alves, M. K., Tagliaferro, A. L., Vitti, M., Creste, S., et al. (2022). Root nitrate uptake in sugarcane (Saccharum spp.) is modulated by transcriptional and presumably posttranscriptional regulation of the NRT2.1/NRT3.1 transport system. Molecular Genetics and Genomics, 297, 1403-1421. doi:10.1007/s00438-022-01929-8
NLM
Lima JE, Serezino LHD, Alves MK, Tagliaferro AL, Vitti M, Creste S, Riaño-Pachón DM, Santos RV, Figueira AV de O. Root nitrate uptake in sugarcane (Saccharum spp.) is modulated by transcriptional and presumably posttranscriptional regulation of the NRT2.1/NRT3.1 transport system [Internet]. Molecular Genetics and Genomics. 2022 ; 297 1403-1421.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1007/s00438-022-01929-8
Vancouver
Lima JE, Serezino LHD, Alves MK, Tagliaferro AL, Vitti M, Creste S, Riaño-Pachón DM, Santos RV, Figueira AV de O. Root nitrate uptake in sugarcane (Saccharum spp.) is modulated by transcriptional and presumably posttranscriptional regulation of the NRT2.1/NRT3.1 transport system [Internet]. Molecular Genetics and Genomics. 2022 ; 297 1403-1421.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1007/s00438-022-01929-8
Trabalho de evento-resumo periodico
ContFree-NGS: removing reads from contaminating organisms in next generation sequencing data (2021)
Peres, Felipe Vaz ; Riaño-Pachón, Diego Mauricio
Source: Advances in Bioinformatics and Computational Biology. Conference titles: Brazilian Symposium on Bioinformatics (BSB 2021). Unidade: CENA
Subjects: BIOINFORMÁTICA, SOFTWARES, CONTAMINAÇÃO, ZOOLOGIA (CLASSIFICAÇÃO)
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PERES, Felipe Vaz e RIAÑO-PACHÓN, Diego Mauricio. ContFree-NGS: removing reads from contaminating organisms in next generation sequencing data. Advances in Bioinformatics and Computational Biology. Heidelberg: Centro de Energia Nuclear na Agricultura, Universidade de São Paulo. . Acesso em: 28 nov. 2025. , 2021
APA
Peres, F. V., & Riaño-Pachón, D. M. (2021). ContFree-NGS: removing reads from contaminating organisms in next generation sequencing data. Advances in Bioinformatics and Computational Biology. Heidelberg: Centro de Energia Nuclear na Agricultura, Universidade de São Paulo.
NLM
Peres FV, Riaño-Pachón DM. ContFree-NGS: removing reads from contaminating organisms in next generation sequencing data. Advances in Bioinformatics and Computational Biology. 2021 ; 65-68.[citado 2025 nov. 28 ]
Vancouver
Peres FV, Riaño-Pachón DM. ContFree-NGS: removing reads from contaminating organisms in next generation sequencing data. Advances in Bioinformatics and Computational Biology. 2021 ; 65-68.[citado 2025 nov. 28 ]
Artigo de periodico
Overexpression of a sugarcane BAHD acyltransferase alters hydroxycinnamate content in maize cell wall (2021)
Fanelli, Amanda; Rancour, David M. ; Sullivan, Michael ; Karlen, Steven D. ; Ralph, John ; Riaño-Pachón, Diego Mauricio ; Vicentini, Renato ; Silva, Tatiane da Franca ; Ferraz, André Luis ; Hatfield, Ronald D. ; Romanel, Elisson Antonio
Source: Frontiers in Plant Science. Unidades: CENA, EEL
Subjects: ENGENHARIA, BIOMASSA, ÁCIDOS, MILHO
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ABNT
FANELLI, Amanda et al. Overexpression of a sugarcane BAHD acyltransferase alters hydroxycinnamate content in maize cell wall. Frontiers in Plant Science, v. 12, 2021Tradução . . Disponível em: https://doi.org/10.3389/fpls.2021.626168. Acesso em: 28 nov. 2025.
APA
Fanelli, A., Rancour, D. M., Sullivan, M., Karlen, S. D., Ralph, J., Riaño-Pachón, D. M., et al. (2021). Overexpression of a sugarcane BAHD acyltransferase alters hydroxycinnamate content in maize cell wall. Frontiers in Plant Science, 12. doi:10.3389/fpls.2021.626168
NLM
Fanelli A, Rancour DM, Sullivan M, Karlen SD, Ralph J, Riaño-Pachón DM, Vicentini R, Silva T da F, Ferraz AL, Hatfield RD, Romanel EA. Overexpression of a sugarcane BAHD acyltransferase alters hydroxycinnamate content in maize cell wall [Internet]. Frontiers in Plant Science. 2021 ; 12[citado 2025 nov. 28 ] Available from: https://doi.org/10.3389/fpls.2021.626168
Vancouver
Fanelli A, Rancour DM, Sullivan M, Karlen SD, Ralph J, Riaño-Pachón DM, Vicentini R, Silva T da F, Ferraz AL, Hatfield RD, Romanel EA. Overexpression of a sugarcane BAHD acyltransferase alters hydroxycinnamate content in maize cell wall [Internet]. Frontiers in Plant Science. 2021 ; 12[citado 2025 nov. 28 ] Available from: https://doi.org/10.3389/fpls.2021.626168
Parte de monografia/livro
Modern approaches for transcriptome analyses in plants (2021)
Riaño-Pachón, Diego Mauricio ; Espitia-Navarro, Hector Fabio; Riascos, John Jaime; Margarido, Gabriel Rodrigues Alves
Source: Advances in plant omics and systems biology approaches. Proteomics, metabolomics, interactomics and systems biology. Unidades: ESALQ, CENA
Subjects: EXPRESSÃO GÊNICA, POLIMORFISMO, SEQUENCIAMENTO GENÉTICO, TRANSCRIÇÃO GÊNICA
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ABNT
RIAÑO-PACHÓN, Diego Mauricio et al. Modern approaches for transcriptome analyses in plants. Advances in plant omics and systems biology approaches. Proteomics, metabolomics, interactomics and systems biology. Tradução . Cham: Springer Nature Switzerland AG, 2021. . Disponível em: https://doi.org/10.1007/978-3-030-80352-0. Acesso em: 28 nov. 2025.
APA
Riaño-Pachón, D. M., Espitia-Navarro, H. F., Riascos, J. J., & Margarido, G. R. A. (2021). Modern approaches for transcriptome analyses in plants. In Advances in plant omics and systems biology approaches. Proteomics, metabolomics, interactomics and systems biology. Cham: Springer Nature Switzerland AG. doi:10.1007/978-3-030-80352-0
NLM
Riaño-Pachón DM, Espitia-Navarro HF, Riascos JJ, Margarido GRA. Modern approaches for transcriptome analyses in plants [Internet]. In: Advances in plant omics and systems biology approaches. Proteomics, metabolomics, interactomics and systems biology. Cham: Springer Nature Switzerland AG; 2021. [citado 2025 nov. 28 ] Available from: https://doi.org/10.1007/978-3-030-80352-0
Vancouver
Riaño-Pachón DM, Espitia-Navarro HF, Riascos JJ, Margarido GRA. Modern approaches for transcriptome analyses in plants [Internet]. In: Advances in plant omics and systems biology approaches. Proteomics, metabolomics, interactomics and systems biology. Cham: Springer Nature Switzerland AG; 2021. [citado 2025 nov. 28 ] Available from: https://doi.org/10.1007/978-3-030-80352-0
Artigo de periodico
The experience of teaching introductory programming skills to bioscientists in Brazil (2021)
Zuvanov, Luíza ; Garcia, Ana Letycia Basso ; Correr, Fernando Henrique ; Bizarria Júnior, Rodolfo; Costa Filho, Ailton Pereira da ; Costa, Alisson Hayasi da 6; Thomaz, Andréa T. 7; Pinheiro, Ana Lúcia Mendes ; Riaño-Pachón, Diego Mauricio ; Winck, Flavia Vischi ; Esteves, Franciele Grego 4; Margarido, Gabriel Rodrigues Alves ; Casagrande, Giovanna Maria Stanfoca; Frajacomo, Henrique Cordeiro; Martins, Leonardo; Cavalheiro, Mariana Feitosa; Grachet, Nathalia Graf; Silva, Raniere Gaia Costa da; Cerri, Ricardo; Ramos, Rommel Thiago Juca; Medeiros, Simone Daniela Sartorio de; Tavares, Thayana Vieira; Santos, Renato Augusto Corrêa dos
Source: PLoS Computational Biology. Unidades: CENA, ESALQ, FCFRP, IFSC, FMRP
Subjects: BIOINFORMÁTICA, COVID-19, ENSINO POR COMPUTADOR, LINGUAGEM DE PROGRAMAÇÃO
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
ZUVANOV, Luíza et al. The experience of teaching introductory programming skills to bioscientists in Brazil. PLoS Computational Biology, v. 17, n. 11, p. 1-16, 2021Tradução . . Disponível em: https://doi.org/10.1371/journal.pcbi.1009534. Acesso em: 28 nov. 2025.
APA
Zuvanov, L., Garcia, A. L. B., Correr, F. H., Bizarria Júnior, R., Costa Filho, A. P. da, Costa, A. H. da 6, et al. (2021). The experience of teaching introductory programming skills to bioscientists in Brazil. PLoS Computational Biology, 17( 11), 1-16. doi:10.1371/journal.pcbi.1009534
NLM
Zuvanov L, Garcia ALB, Correr FH, Bizarria Júnior R, Costa Filho AP da, Costa AH da 6, Thomaz AT 7, Pinheiro ALM, Riaño-Pachón DM, Winck FV, Esteves FG 4, Margarido GRA, Casagrande GMS, Frajacomo HC, Martins L, Cavalheiro MF, Grachet NG, Silva RGC da, Cerri R, Ramos RTJ, Medeiros SDS de, Tavares TV, Santos RAC dos. The experience of teaching introductory programming skills to bioscientists in Brazil [Internet]. PLoS Computational Biology. 2021 ; 17( 11): 1-16.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1371/journal.pcbi.1009534
Vancouver
Zuvanov L, Garcia ALB, Correr FH, Bizarria Júnior R, Costa Filho AP da, Costa AH da 6, Thomaz AT 7, Pinheiro ALM, Riaño-Pachón DM, Winck FV, Esteves FG 4, Margarido GRA, Casagrande GMS, Frajacomo HC, Martins L, Cavalheiro MF, Grachet NG, Silva RGC da, Cerri R, Ramos RTJ, Medeiros SDS de, Tavares TV, Santos RAC dos. The experience of teaching introductory programming skills to bioscientists in Brazil [Internet]. PLoS Computational Biology. 2021 ; 17( 11): 1-16.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1371/journal.pcbi.1009534
Artigo de periodico
A reductionist approach using primary and metastatic cell-derived extracellular vesicles reveals hub proteins associated with oral cancer prognosis (2021)
Lopes, Ariane Fidelis Busso; Carnielli, Carolina Moretto ; Winck, Flavia Vischi ; Patroni, Fábio Malta de Sá ; Oliveira, Ana Karina de ; Granato, Daniela Campos; Costa, Rute Alves Pereira e; Domingues, Romênia Ramos; Pauletti, Bianca Alves; Riaño-Pachón, Diego Mauricio ; Aricetti, Juliana; Caldana, Camila ; Graner, Edgard ; Coletta, Ricardo Della ; Dryden, Kelly ; Fox, Jay William ; Leme, Adriana Franco Paes
Source: Molecular & Cellular Proteomics. Unidade: CENA
Subjects: NEOPLASIAS BUCAIS, LINFONODOS, METÁSTASE NEOPLÁSICA, PROTEÔMICA, ESPECTROMETRIA DE MASSAS, PROGNÓSTICO
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
LOPES, Ariane Fidelis Busso et al. A reductionist approach using primary and metastatic cell-derived extracellular vesicles reveals hub proteins associated with oral cancer prognosis. Molecular & Cellular Proteomics, 2021Tradução . . Disponível em: https://doi.org/10.1016/j.mcpro.2021.100118. Acesso em: 28 nov. 2025.
APA
Lopes, A. F. B., Carnielli, C. M., Winck, F. V., Patroni, F. M. de S., Oliveira, A. K. de, Granato, D. C., et al. (2021). A reductionist approach using primary and metastatic cell-derived extracellular vesicles reveals hub proteins associated with oral cancer prognosis. Molecular & Cellular Proteomics. doi:10.1016/j.mcpro.2021.100118
NLM
Lopes AFB, Carnielli CM, Winck FV, Patroni FM de S, Oliveira AK de, Granato DC, Costa RAP e, Domingues RR, Pauletti BA, Riaño-Pachón DM, Aricetti J, Caldana C, Graner E, Coletta RD, Dryden K, Fox JW, Leme AFP. A reductionist approach using primary and metastatic cell-derived extracellular vesicles reveals hub proteins associated with oral cancer prognosis [Internet]. Molecular & Cellular Proteomics. 2021 ;[citado 2025 nov. 28 ] Available from: https://doi.org/10.1016/j.mcpro.2021.100118
Vancouver
Lopes AFB, Carnielli CM, Winck FV, Patroni FM de S, Oliveira AK de, Granato DC, Costa RAP e, Domingues RR, Pauletti BA, Riaño-Pachón DM, Aricetti J, Caldana C, Graner E, Coletta RD, Dryden K, Fox JW, Leme AFP. A reductionist approach using primary and metastatic cell-derived extracellular vesicles reveals hub proteins associated with oral cancer prognosis [Internet]. Molecular & Cellular Proteomics. 2021 ;[citado 2025 nov. 28 ] Available from: https://doi.org/10.1016/j.mcpro.2021.100118
Artigo de periodico
Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids (2021)
Arias, Tatiana ; Riaño-Pachón, Diego Mauricio ; Stilio, Verónica S. Di
Source: Applications in Plant Sciences. Unidade: CENA
Subjects: FISIOLOGIA VEGETAL, POLINIZAÇÃO, GENOMAS
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ABNT
ARIAS, Tatiana e RIAÑO-PACHÓN, Diego Mauricio e STILIO, Verónica S. Di. Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids. Applications in Plant Sciences, v. 9, n. 1, 2021Tradução . . Disponível em: https://doi.org/10.1002/aps3.11407. Acesso em: 28 nov. 2025.
APA
Arias, T., Riaño-Pachón, D. M., & Stilio, V. S. D. (2021). Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids. Applications in Plant Sciences, 9( 1). doi:10.1002/aps3.11407
NLM
Arias T, Riaño-Pachón DM, Stilio VSD. Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids [Internet]. Applications in Plant Sciences. 2021 ; 9( 1):[citado 2025 nov. 28 ] Available from: https://doi.org/10.1002/aps3.11407
Vancouver
Arias T, Riaño-Pachón DM, Stilio VSD. Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids [Internet]. Applications in Plant Sciences. 2021 ; 9( 1):[citado 2025 nov. 28 ] Available from: https://doi.org/10.1002/aps3.11407
Artigo de periodico
Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomes (2021)
Almeida, Jaqueline Raquel de; Riaño-Pachón, Diego Mauricio ; Franceschini, Livia Maria; Santos, Isaneli Batista dos ; Ferrarezi, Jessica Aparecida ; Andrade, Pedro Avelino Maia de ; Vitorello, Claudia Barros Monteiro ; Labate, Carlos Alberto ; Verdi, Maria Carolina Quecine
Source: Plos one. Unidades: CENA, ESALQ
Subjects: DNA MITOCONDRIAL, FERRUGEM (DOENÇA DE PLANTA), FILOGENIA, FUNGOS FITOPATOGÊNICOS, GENOMAS, MYRTALES, PROTEÔMICA, SEQUENCIAMENTO GENÉTICO
A citação é gerada automaticamente e pode não estar totalmente de acordo com as normas
ABNT
ALMEIDA, Jaqueline Raquel de et al. Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomes. Plos one, v. 16, n. 3, p. 1-20, 2021Tradução . . Disponível em: https://doi.org/10.1371/journal.pone.0248054. Acesso em: 28 nov. 2025.
APA
Almeida, J. R. de, Riaño-Pachón, D. M., Franceschini, L. M., Santos, I. B. dos, Ferrarezi, J. A., Andrade, P. A. M. de, et al. (2021). Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomes. Plos one, 16( 3), 1-20. doi:10.1371/journal.pone.0248054
NLM
Almeida JR de, Riaño-Pachón DM, Franceschini LM, Santos IB dos, Ferrarezi JA, Andrade PAM de, Vitorello CBM, Labate CA, Verdi MCQ. Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomes [Internet]. Plos one. 2021 ; 16( 3): 1-20.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1371/journal.pone.0248054
Vancouver
Almeida JR de, Riaño-Pachón DM, Franceschini LM, Santos IB dos, Ferrarezi JA, Andrade PAM de, Vitorello CBM, Labate CA, Verdi MCQ. Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomes [Internet]. Plos one. 2021 ; 16( 3): 1-20.[citado 2025 nov. 28 ] Available from: https://doi.org/10.1371/journal.pone.0248054
Artigo de periodico
Shedding light on the dynamic role of the “target of rapamycin” kinase in the fast-growing C4 species Setaria viridis, a suitable model for biomass crops (2021)
Silva, Viviane Cristina Heinzen da ; Martins, Marina C. M. ; Calderan Rodrigues, Maria Juliana ; Artins, Anthony; Bello, Carolina Cassano Monte ; Gupta, Saurabh ; Sobreira, Tiago José Paschoal ; Riaño-Pachón, Diego Mauricio ; Mafra, Valéria ; Caldana, Camila
Source: Frontiers in Plant Science. Unidade: CENA
Subjects: METABOLISMO VEGETAL, CRESCIMENTO VEGETAL, DESENVOLVIMENTO VEGETAL, NUTRIENTES, BIOENERGIA
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ABNT
SILVA, Viviane Cristina Heinzen da et al. Shedding light on the dynamic role of the “target of rapamycin” kinase in the fast-growing C4 species Setaria viridis, a suitable model for biomass crops. Frontiers in Plant Science, v. 12, 2021Tradução . . Disponível em: https://doi.org/10.3389/fpls.2021.637508. Acesso em: 28 nov. 2025.
APA
Silva, V. C. H. da, Martins, M. C. M., Calderan Rodrigues, M. J., Artins, A., Bello, C. C. M., Gupta, S., et al. (2021). Shedding light on the dynamic role of the “target of rapamycin” kinase in the fast-growing C4 species Setaria viridis, a suitable model for biomass crops. Frontiers in Plant Science, 12. doi:10.3389/fpls.2021.637508
NLM
Silva VCH da, Martins MCM, Calderan Rodrigues MJ, Artins A, Bello CCM, Gupta S, Sobreira TJP, Riaño-Pachón DM, Mafra V, Caldana C. Shedding light on the dynamic role of the “target of rapamycin” kinase in the fast-growing C4 species Setaria viridis, a suitable model for biomass crops [Internet]. Frontiers in Plant Science. 2021 ; 12[citado 2025 nov. 28 ] Available from: https://doi.org/10.3389/fpls.2021.637508
Vancouver
Silva VCH da, Martins MCM, Calderan Rodrigues MJ, Artins A, Bello CCM, Gupta S, Sobreira TJP, Riaño-Pachón DM, Mafra V, Caldana C. Shedding light on the dynamic role of the “target of rapamycin” kinase in the fast-growing C4 species Setaria viridis, a suitable model for biomass crops [Internet]. Frontiers in Plant Science. 2021 ; 12[citado 2025 nov. 28 ] Available from: https://doi.org/10.3389/fpls.2021.637508

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