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The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean (2018)

  • Authors:
  • USP affiliated author: LOPES, RUBENS MENDES - IO
  • School: IO
  • DOI: 10.1038/s41396-017-0029-1
  • Subjects: COMUNIDADES MARINHAS; FITOPLÂNCTON MARINHO; COMUNIDADES MARINHAS
  • Language: Inglês
  • Imprenta:
  • Source:
  • Online source accessDOI
    Informações sobre o DOI: 10.1038/s41396-017-0029-1 (Fonte: oaDOI API)
    • Este periódico é de assinatura
    • Este artigo é de acesso aberto
    • URL de acesso aberto
    • Cor do Acesso Aberto: hybrid
    • Licença: cc-by

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    • ABNT

      VINCET, Flora J; COLIN, Sébastien; ROMAC, Sarah; et al. The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean. The ISME Journal, Bethesda, MD, v. 12, p. 1094-1098, 2018. Disponível em: < https://doi.org/10.1038/s41396-017-0029-1 > DOI: 10.1038/s41396-017-0029-1.
    • APA

      Vincet, F. J., Colin, S., Romac, S., Scalco, E., Bittner, L., Garcia, Y., et al. (2018). The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean. The ISME Journal, 12, 1094-1098. doi:10.1038/s41396-017-0029-1
    • NLM

      Vincet FJ, Colin S, Romac S, Scalco E, Bittner L, Garcia Y, Lopes RM, Dolan JR, Zingone A, Vargas C de, Bowler C. The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean [Internet]. The ISME Journal. 2018 ; 12 1094-1098.Available from: https://doi.org/10.1038/s41396-017-0029-1
    • Vancouver

      Vincet FJ, Colin S, Romac S, Scalco E, Bittner L, Garcia Y, Lopes RM, Dolan JR, Zingone A, Vargas C de, Bowler C. The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean [Internet]. The ISME Journal. 2018 ; 12 1094-1098.Available from: https://doi.org/10.1038/s41396-017-0029-1

    Referências citadas na obra
    Field CB, Behrenfeld MJ, Randerson JT, Falkowski P. Primary production of the biosphere: integrating terrestrial and oceanic components. Science. 1998;281:237–40.
    Nelson DM, Tréguer P, Brzezinski MA, Leynaert A, Quéguiner B. Production and dissolution of biogenic silica in the ocean: revised global estimates, comparison with regional data and relationship to biogenic sedimentation. Glob Biogeochem Cycles. 1995;9: 359–72.
    Falkowski PG. The ocean’s invisible forest. Sci Am. 2002;287: 54–61.
    Smetacek V. Biological oceanography: diatoms and the silicate factor. Nature. 1998;391:224–25.
    Morel FMM, Price NM. The biogeochemical cycles of trace metals in the oceans. Science. 2003;300:944–47.
    Malviya S, Scalco E, Audic S, Vincent F, Veluchamy A, Poulain J, et al. Insights into global diatom distribution and diversity in the world’s ocean. Proc Natl Acad Sci USA. 2016;113:E1516–25.
    Foster RA, Kuypers MMM, Vagner T, Paerl RW, Musat N, Zehr JP. Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses. ISME J. 2010;5:1484–93.
    Tomaru Y, Takao Y, Suzuki H, Nagumo T, Nagasaki K. Isolation and characterization of a single-stranded RNA virus infecting the bloom-forming diatom C haetoceros socialis. Appl Environ Microbiol. 2009;75:2375–81.
    Holzmann M, Berney C, Hohenegger J. Molecular identification of diatom endosymbionts in nummulitid Foraminifera. Symbiosis. 2006;42:93–101.
    Schnepf E, Elbrächter M. Dinophyte chloroplasts and phylogeny—a review. Grana. 1999;38:81–97.
    Takano Y, Hansen G, Fujita D, Horiguchi T. Serial replacement of diatom endosymbionts in two freshwater dinoflagellates, P eridiniopsis spp. (Peridiniales, Dinophyceae). Phycologia. 2008;47:41–53.
    Kaczmarska I, Ehrman JM, Bates SS, Green DH, Léger C, Harris J. Diversity and distribution of epibiotic bacteria on Pseudo-nitzschia multiseries (Bacillariophyceae) in culture, and comparison with those on diatoms in native seawater. Harmful Algae. 2005;4:725–41.
    Fernandes LF, Calixto-Fere M. Morfologia e distribuição de duas diatomáceas (Bacillariophyta) epizóicas no Brasil. Acta Bot Bras. 2012;26:836–41.
    Gárate-Lizárraga I, Muñetón-Gómez MS. Primer registro de la diatomea epibionte Pseudohimantidium pacificum y de otras asociaciones simbióticas en el Golfo de California. Acta Bot Mex. 2009;88:31–45.
    Ruggiero MV, Sarno D, Barra L, Kooistra WHCF, Montresor M, Zingone A. Diversity and temporal pattern of Pseudo-nitzschia species (Bacillariophyceae) through the molecular lens. Harmful Algae. 2015;42:15–24.
    Sazhin AF, Felipe Artigas L, Nejstgaard JC, Frischer MF. The colonization of two Phaeocystis species (Prymnesiophyceae) by pennate diatoms and other protists: a significant contribution to colony biomass. Phaeocystis, major link in the biogeochemical cycling of climate-relevant elements. Biogeochemistry. 2007; 83: 137.
    Gómez F, Moreira D, Benzerara K, López-García P. S olenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3. Environ Microbiol. 2010;13:193–202.
    Nagasawa S, Warren A. Redescription of V orticella o ceanica Zacharias, 1906 (Ciliophora: Peritrichia) with notes on its host, the marine planktonic diatom C haetoceros coarctatum Lauder,1864. Hydrobiologia. 1996;337:27–36.
    Agatha S, Laval-Peuto M, Simon P. The Tintinnid Lorica. In: Dolan JR, Montagnes DJS, Agatha S, Coats WD, Stoecker DK, editors. The Biology and Ecology of Tintinnid Ciliates: Models for Marine Plankton. West Sussex: Wiley-Blackwell; 2013. p. 17–41.
    Bachy C, Dolan JR, López-García P, Deschamps P, Moreira D, Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study. ISME J. 2012a;7:244–55.
    McManus GB, Santoferrara LF. Tintinnids in microzoolankton communities. In: Dolan JR, Montagnes DJS, Agatha S, Stoecker DK, editors. The Biology and Ecology of Tintinnid Ciliates: Models for Marine Plankton. Oxford: Wiley-Blackwell; 2012. p. 198–213.
    Pavillard J. Observations sur les Diatomées (2e série). Bull De la Société Bot De Fr. 1916;60:126–33.
    Gómez F. On the consortium of the tintinnid Eutintinnus and the diatom Chaetoceros in the Pacific ocean. Mar Biol. 2007;151:1899–906.
    Pavillard J. Péridiniens et diatomées pélagiques recueillis par Alain Gerbault entre les Iles Marquises et les Iles Galapagos. Bull. Inst. Océanogr. Monaco. 1935;669:1–8.
    Froneman PW, Pakhomov EA, Meaton V. Observations on the association between the diatom, Fragilariopsis doliolus Wallich, and the tintinnid, Salpingella subconica Kofoid. S Afr J Sci. 1998;94:202–202.
    Decelle J, Colin S and Foster RA. Photosymbioses in marine planktonic protists. In Ohtsuka S, Suzaki T, Horiguchi T, Suzuki N, and Not F, editors. Marine Protists. Springer, Tokyo; 2015.
    Gowing MM, Garrison DL. Abundance and feeding ecology of larger protozooplankton in the ice edge zone of the Weddell and Scotia seas during the austral winter. Deep Sea Res Part A Oceanogr Res Pap. 1992;39:893–919.
    Wasik A, Mikolajczyk E, Ligowski R. Agglutinated loricae of some Baltic and Antarctic Tintinnina species (Ciliophora). J Plankton Res. 1996;18:1931–940.
    Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, et al. A holistic approach to marine eco-systems biology. PLoS Biol. 2011;9:e1001177.
    Bork P, Bowler C, de Vargas C, Gorsky G, Karsenti E, Wincker P. Tara Oceans studies plankton at planetary scale. Science. 2015;348:873–873.
    Zimmermann J, Jahn R, Gemeinholzer B. Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. Org Divers Evol. 2011;11:173–92.
    Bachy C, Gómez F, López-García P, Dolan JR, Moreira D. Molecular phylogeny of tintinnid ciliates (Tintinnida, Ciliophora). Protist. 2012b;163:873–87.
    Santoferrara L, McManus GB, Alder VA. Utility of genetic marker sand morphology for species discrimination within the order Tintinnida (Ciliophora, Spirotrichea). Protist. 2013;164: 24–36.
    Pesant S, Not F, Picheral M, Kandels-Lewis S, Le Bescot N, Gorsky G, et al. Open science resources for the discovery and analysis of Tara Oceans data. Sci data. 2015;2:150023.
    Colin S, Coelho LP, Sunagawa S, Bowler C, Karsenti, Bork EP, et al. Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes. Elife. 2017;6:pii: e26066. (accepted in eLife with minor revisions).
    Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, et al. Fiji: an open-source platform for biological-image analysis. Nat Methods. 2012;9:676–82.
    Dolan JR, Gimenez A, Cornet-Barthaux V. Community structure of tintinnid ciliates of the microzooplankton in the South East Pacific Ocean: comparison of a high primary productitivity with a typical oligotrophic site. J Eukaryot Microbiol. 2016;63: 813–22.
    de Vargas C, Audic S, Henry N, Decelle J, Mahe F, Logares R, et al. Eukaryotic plankton diversity in the sunlit ocean. Science. 2015;348:1261605.
    Richter DJ, Watteaux R, Vannier T, Leconte J, Reygondeau G, Maillet N, et al. Global plankton biogeography is shaped via ocean circulation dynamics. (Manuscript in preparation)
    McDonald SM, Sarno D, Zingone A. Identifying P seudo-nitzschia species in natural samples using genus-specific PCR primers and clone libraries. Harmful Algae. 2007;6:849–60.
    Theriot EC, Ashworth M, Ruck E, Nakov T, Jansen R. A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research. Plant Ecol Evol. 2010;143:278–96. 
    Katoh K, Standley DM. MAFFT: iterative refinement and mdditional methods. Methods Mol Biol Mult Seq Alignment Methods. 2013;1079:131–46.
    Talavera G, Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol USYB. 2007;56:564–77.
    Darriba D, Taboada GL, Doallo R, Posada D. JModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9:772.
    Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59:307–21.
    Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP. Bayesian inference of phylogeny and its impact on evolutionary biology. Science. 2001;294:2310–314.
    Clement M, Posada D, Crandall KA. TCS: a computer program to estimate gene genealogies. Mol Ecol. 2000;9:1657–60.
    Medlin LK, Sims PA. The transfer of Pseudoeunotia doliolus to Fragilariopsis. Beih Zur Nova Hedwig. 1993;106:323–34.
    Round FE, Crawford RM, Mann DG. The diatoms, Biology and Morphology of the Genera. Cambridge: Cambridge University Press; 1990.
    Jonsson PR, Johansson M, Pierce RW. Attachment to suspended particles may improve foraging and reduce predation risk for tintinnid ciliates. Limnol Oceanogr. 2004;49:1907–914.
    Lim HC, Teng ST, Lim PT, Wolf M, Leaw CP. 18S rDNA phylogeny of P seudo-nitzschia (Bacillariophyceae) inferred from sequence-structure information. Phycologia. 2016;55:134–46.
    Laval-Peuto M, Brownlee DC. Identification and systematics of the Tintinnina (Ciliophora): evaluation and suggestion for improvement. Ann. Inst. Océanogr., Paris. 1986;62:69–84.
    Amaral-Zettler LA, Mccliment EA, Ducklow HW, Huse SM. A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS ONE. 2009;4:e6372.
    Gügi B, Costaouec T, Burel C, Lerouge P, Helbert W, Bardor M. Diatom-specific oligosaccharide and polysaccharide structures help to unravel biosynthetic capabilities in diatoms. Mar Drugs. 2015;13:5993–6018.
    Dolan JR, Claustre H, Carlotti F, Plounevez S, Moutin T. Microzooplankton diversity: relationships of tintinnid ciliates with resources, competitors and predators from the Atlantic coast of Morocco to the eastern Mediterranean. Deep Sea Res Part I: Oceanogr Res Pap. 2002;49:1217–232.
    Verity PG, Villareal TA. The relative food value of diatoms, dinoflagellates, flagellates, and cyanobacteria for tintinnid ciliates. Arch Für Protistenkd. 1986;131:71–84.
    Dolan JR. Morphology and ecology in tintinnid ciliates of the marine plankton: correlates of lorica dimensions. Acta Protozool. 2010;49:235–344.
    Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, et al. Determinants of community structure in the global plankton interactome. Science. 2015;348:1262073.

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