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Filtros : "HASHIMOTO, RONALDO FUMIO" Limpar

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  • Artigo de periodico

    Incremental component tree contour computation (2025)

    Silva, Dennis J.; Kosinka, Jiří ; Hashimoto, Ronaldo Fumio ; Roerdink, Jos B. T. M. ; Morimitsu, Alexandre ; Alves, Wonder Alexandre Luz

    Source: Pattern Recognition Letters. Unidade: IME

    Subjects: PROCESSAMENTO DE IMAGENS, COMPUTAÇÃO GRÁFICA

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    • ABNT

      SILVA, Dennis J. et al. Incremental component tree contour computation. Pattern Recognition Letters, v. 187, p. 115-121, 2025Tradução . . Disponível em: https://doi.org/10.1016/j.patrec.2024.11.019. Acesso em: 25 nov. 2025.

    • APA

      Silva, D. J., Kosinka, J., Hashimoto, R. F., Roerdink, J. B. T. M., Morimitsu, A., & Alves, W. A. L. (2025). Incremental component tree contour computation. Pattern Recognition Letters, 187, 115-121. doi:10.1016/j.patrec.2024.11.019

    • NLM

      Silva DJ, Kosinka J, Hashimoto RF, Roerdink JBTM, Morimitsu A, Alves WAL. Incremental component tree contour computation [Internet]. Pattern Recognition Letters. 2025 ; 187 115-121.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.patrec.2024.11.019

    • Vancouver

      Silva DJ, Kosinka J, Hashimoto RF, Roerdink JBTM, Morimitsu A, Alves WAL. Incremental component tree contour computation [Internet]. Pattern Recognition Letters. 2025 ; 187 115-121.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.patrec.2024.11.019

  • Artigo de periodico

    Gene network analysis of Plasmodium falciparum ubiquitin-proteasomal system pathways reveals co-expression of the E1, E2 and E3 enzymes during intraerythrocytic cycle (2025)

    Cano, Lyang Higa ; Ahmed, Waqar ; Lima, Wânia Rezende; Martins, David Corrêa; Parreira, Kleber Simônio ; Garcia, Célia Regina da Silva ; Hashimoto, Ronaldo Fumio

    Source: Heliyon. Unidades: FCF, IME, Interunidades em Bioinformática, EESC

    Subjects: GENÉTICA, GENÉTICA, BIOINFORMÁTICA

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    • ABNT

      CANO, Lyang Higa et al. Gene network analysis of Plasmodium falciparum ubiquitin-proteasomal system pathways reveals co-expression of the E1, E2 and E3 enzymes during intraerythrocytic cycle. Heliyon, v. 11, n. artigo e44019, p. 1-12, 2025Tradução . . Disponível em: https://doi.org/10.1016/j.heliyon.2025.e44019. Acesso em: 25 nov. 2025.

    • APA

      Cano, L. H., Ahmed, W., Lima, W. R., Martins, D. C., Parreira, K. S., Garcia, C. R. da S., & Hashimoto, R. F. (2025). Gene network analysis of Plasmodium falciparum ubiquitin-proteasomal system pathways reveals co-expression of the E1, E2 and E3 enzymes during intraerythrocytic cycle. Heliyon, 11( artigo e44019), 1-12. doi:10.1016/j.heliyon.2025.e44019

    • NLM

      Cano LH, Ahmed W, Lima WR, Martins DC, Parreira KS, Garcia CR da S, Hashimoto RF. Gene network analysis of Plasmodium falciparum ubiquitin-proteasomal system pathways reveals co-expression of the E1, E2 and E3 enzymes during intraerythrocytic cycle [Internet]. Heliyon. 2025 ; 11( artigo e44019): 1-12.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.heliyon.2025.e44019

    • Vancouver

      Cano LH, Ahmed W, Lima WR, Martins DC, Parreira KS, Garcia CR da S, Hashimoto RF. Gene network analysis of Plasmodium falciparum ubiquitin-proteasomal system pathways reveals co-expression of the E1, E2 and E3 enzymes during intraerythrocytic cycle [Internet]. Heliyon. 2025 ; 11( artigo e44019): 1-12.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.heliyon.2025.e44019

  • Trabalho de evento-anais periodico

    Efficient connected alternating sequential filters based on component trees (2025)

    Alves, Wonder Alexandre Luz ; Passat, Nicolas ; Silva, Dennis José da; Morimitsu, Alexandre ; Hashimoto, Ronaldo Fumio

    Source: Discrete Geometry and Mathematical Morphology. DGMM 2025. Lecture Notes in Computer Science. Conference titles: International Conference on Discrete Geometry and Mathematical Morphology - DGMM. Unidade: IME

    Subjects: ESTRUTURAS DE DADOS, OPERADORES E COMPILADORES, ALGORITMOS

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    • ABNT

      ALVES, Wonder Alexandre Luz et al. Efficient connected alternating sequential filters based on component trees. Discrete Geometry and Mathematical Morphology. DGMM 2025. Lecture Notes in Computer Science. Cham: Springer. Disponível em: https://repositorio.usp.br/directbitstream/cbe2bed3-d534-4032-bfcc-c3e5380014d8/3259076.pdf. Acesso em: 25 nov. 2025. , 2025

    • APA

      Alves, W. A. L., Passat, N., Silva, D. J. da, Morimitsu, A., & Hashimoto, R. F. (2025). Efficient connected alternating sequential filters based on component trees. Discrete Geometry and Mathematical Morphology. DGMM 2025. Lecture Notes in Computer Science. Cham: Springer. Recuperado de https://repositorio.usp.br/directbitstream/cbe2bed3-d534-4032-bfcc-c3e5380014d8/3259076.pdf

    • NLM

      Alves WAL, Passat N, Silva DJ da, Morimitsu A, Hashimoto RF. Efficient connected alternating sequential filters based on component trees [Internet]. Discrete Geometry and Mathematical Morphology. DGMM 2025. Lecture Notes in Computer Science. 2025 ;[citado 2025 nov. 25 ] Available from: https://repositorio.usp.br/directbitstream/cbe2bed3-d534-4032-bfcc-c3e5380014d8/3259076.pdf

    • Vancouver

      Alves WAL, Passat N, Silva DJ da, Morimitsu A, Hashimoto RF. Efficient connected alternating sequential filters based on component trees [Internet]. Discrete Geometry and Mathematical Morphology. DGMM 2025. Lecture Notes in Computer Science. 2025 ;[citado 2025 nov. 25 ] Available from: https://repositorio.usp.br/directbitstream/cbe2bed3-d534-4032-bfcc-c3e5380014d8/3259076.pdf

  • Artigo de periodico

    DNA damage-induced ferroptosis: a boolean model regulating p53 and non-coding RNAs in drug resistance (2025)

    Gupta, Shantanu ; Silveira, Daner Acunha ; Mombach, Jose Carlos M. ; Hashimoto, Ronaldo Fumio

    Source: Proteomes. Unidade: IME

    Subjects: BIOINFORMÁTICA, MODELAGEM COMPUTACIONAL, RNA

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    • ABNT

      GUPTA, Shantanu et al. DNA damage-induced ferroptosis: a boolean model regulating p53 and non-coding RNAs in drug resistance. Proteomes, v. 13, n. 1, p. 1-20, 2025Tradução . . Disponível em: https://doi.org/10.3390/proteomes13010006. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Silveira, D. A., Mombach, J. C. M., & Hashimoto, R. F. (2025). DNA damage-induced ferroptosis: a boolean model regulating p53 and non-coding RNAs in drug resistance. Proteomes, 13( 1), 1-20. doi:10.3390/proteomes13010006

    • NLM

      Gupta S, Silveira DA, Mombach JCM, Hashimoto RF. DNA damage-induced ferroptosis: a boolean model regulating p53 and non-coding RNAs in drug resistance [Internet]. Proteomes. 2025 ; 13( 1): 1-20.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/proteomes13010006

    • Vancouver

      Gupta S, Silveira DA, Mombach JCM, Hashimoto RF. DNA damage-induced ferroptosis: a boolean model regulating p53 and non-coding RNAs in drug resistance [Internet]. Proteomes. 2025 ; 13( 1): 1-20.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/proteomes13010006

  • Artigo de periodico

    Multichannel image classification based on adaptive attribute profiles (2025)

    Alves, Wonder Alexandre Luz ; Campos, Wander S.; Gobber, Charles F. ; Silva, Dennis J.; Hashimoto, Ronaldo Fumio

    Source: Pattern Recognition Letters. Unidade: IME

    Assunto: SENSORIAMENTO REMOTO

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    • ABNT

      ALVES, Wonder Alexandre Luz et al. Multichannel image classification based on adaptive attribute profiles. Pattern Recognition Letters, v. 187, p. 107-114, 2025Tradução . . Disponível em: https://doi.org/10.1016/j.patrec.2024.11.015. Acesso em: 25 nov. 2025.

    • APA

      Alves, W. A. L., Campos, W. S., Gobber, C. F., Silva, D. J., & Hashimoto, R. F. (2025). Multichannel image classification based on adaptive attribute profiles. Pattern Recognition Letters, 187, 107-114. doi:10.1016/j.patrec.2024.11.015

    • NLM

      Alves WAL, Campos WS, Gobber CF, Silva DJ, Hashimoto RF. Multichannel image classification based on adaptive attribute profiles [Internet]. Pattern Recognition Letters. 2025 ; 187 107-114.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.patrec.2024.11.015

    • Vancouver

      Alves WAL, Campos WS, Gobber CF, Silva DJ, Hashimoto RF. Multichannel image classification based on adaptive attribute profiles [Internet]. Pattern Recognition Letters. 2025 ; 187 107-114.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.patrec.2024.11.015

  • Trabalho de evento-resumo

    Identification of IP3 pathway components in Plasmodium falciparum and P. chabaudi using gene co-expression networks (2025)

    Cano, Lyang Higa; Garcia, Celia Regina da Silva; Hashimoto, Ronaldo Fumio

    Source: Abstracts/Posters. Conference titles: Brazilian Symposium on Bioinformatics - BSB. Unidades: FCF, IME, Interunidades em Bioinformática

    Subjects: PLASMODIUM, MELATONIN, CA 2+ , IP3 RECEPTOR, GENE CO-EXPRESSION NETWORKS., PLASMODIUM FALCIPARUM, MALÁRIA, MELATONINA, BIOINFORMÁTICA, EXPRESSÃO GÊNICA

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    • ABNT

      CANO, Lyang Higa e GARCIA, Celia Regina da Silva e HASHIMOTO, Ronaldo Fumio. Identification of IP3 pathway components in Plasmodium falciparum and P. chabaudi using gene co-expression networks. 2025, Anais.. Porto Alegre: SBC, 2025. p. 1-3. Disponível em: http://bsb.sbc.org.br/2025/wp-content/uploads/sites/9/2025/09/Identification-of-IP3-Pathway-Components-in-Plasmodium-falciparum-and-P.-chabaudi-Using-Gene-Co-expression-Networks.pdf. Acesso em: 25 nov. 2025.

    • APA

      Cano, L. H., Garcia, C. R. da S., & Hashimoto, R. F. (2025). Identification of IP3 pathway components in Plasmodium falciparum and P. chabaudi using gene co-expression networks. In Abstracts/Posters (p. 1-3). Porto Alegre: SBC. Recuperado de http://bsb.sbc.org.br/2025/wp-content/uploads/sites/9/2025/09/Identification-of-IP3-Pathway-Components-in-Plasmodium-falciparum-and-P.-chabaudi-Using-Gene-Co-expression-Networks.pdf

    • NLM

      Cano LH, Garcia CR da S, Hashimoto RF. Identification of IP3 pathway components in Plasmodium falciparum and P. chabaudi using gene co-expression networks [Internet]. Abstracts/Posters. 2025 ; 1-3.[citado 2025 nov. 25 ] Available from: http://bsb.sbc.org.br/2025/wp-content/uploads/sites/9/2025/09/Identification-of-IP3-Pathway-Components-in-Plasmodium-falciparum-and-P.-chabaudi-Using-Gene-Co-expression-Networks.pdf

    • Vancouver

      Cano LH, Garcia CR da S, Hashimoto RF. Identification of IP3 pathway components in Plasmodium falciparum and P. chabaudi using gene co-expression networks [Internet]. Abstracts/Posters. 2025 ; 1-3.[citado 2025 nov. 25 ] Available from: http://bsb.sbc.org.br/2025/wp-content/uploads/sites/9/2025/09/Identification-of-IP3-Pathway-Components-in-Plasmodium-falciparum-and-P.-chabaudi-Using-Gene-Co-expression-Networks.pdf

  • Artigo de periodico

    Targeting NSCLC drug resistance: systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis (2025)

    Gupta, Shantanu ; Silveira, Daner Acunha ; Mombach, Jose Carlos M. ; Hashimoto, Ronaldo Fumio

    Source: Journal of The Royal Society Interface. Unidade: IME

    Subjects: NEOPLASIAS PULMONARES, MEDICAMENTO, SIMULAÇÃO, GEOMETRIA E MODELAGEM COMPUTACIONAL, ESTRATÉGIAS TERAPÊUTICAS

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      GUPTA, Shantanu et al. Targeting NSCLC drug resistance: systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis. Journal of The Royal Society Interface, v. 22, n. 226, p. 1-11, 2025Tradução . . Disponível em: https://doi.org/10.1098/rsif.2024.0852. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Silveira, D. A., Mombach, J. C. M., & Hashimoto, R. F. (2025). Targeting NSCLC drug resistance: systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis. Journal of The Royal Society Interface, 22( 226), 1-11. doi:10.1098/rsif.2024.0852

    • NLM

      Gupta S, Silveira DA, Mombach JCM, Hashimoto RF. Targeting NSCLC drug resistance: systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis [Internet]. Journal of The Royal Society Interface. 2025 ; 22( 226): 1-11.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1098/rsif.2024.0852

    • Vancouver

      Gupta S, Silveira DA, Mombach JCM, Hashimoto RF. Targeting NSCLC drug resistance: systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis [Internet]. Journal of The Royal Society Interface. 2025 ; 22( 226): 1-11.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1098/rsif.2024.0852

  • Trabalho de evento-anais periodico

    Differential maximum euclidean distance transform computation in component trees (2024)

    Silva, Dennis José da; Miranda, Paulo André Vechiatto de ; Alves, Wonder Alexandre Luz ; Hashimoto, Ronaldo Fumio ; Kosinka, Jiří ; Roerdink, Jos B. T. M.

    Source: Discrete Geometry and Mathematical Morphology. DGMM 2024. Lecture Notes in Computer Science vol 14605. Conference titles: International Conference on Discrete Geometry and Mathematical Morphology - DGMM. Unidade: IME

    Subjects: COMPUTAÇÃO APLICADA, COMPUTAÇÃO GRÁFICA

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    • ABNT

      SILVA, Dennis José da et al. Differential maximum euclidean distance transform computation in component trees. Discrete Geometry and Mathematical Morphology. DGMM 2024. Lecture Notes in Computer Science vol 14605. Cham: Springer. Disponível em: https://doi.org/10.1007/978-3-031-57793-2_6. Acesso em: 25 nov. 2025. , 2024

    • APA

      Silva, D. J. da, Miranda, P. A. V. de, Alves, W. A. L., Hashimoto, R. F., Kosinka, J., & Roerdink, J. B. T. M. (2024). Differential maximum euclidean distance transform computation in component trees. Discrete Geometry and Mathematical Morphology. DGMM 2024. Lecture Notes in Computer Science vol 14605. Cham: Springer. doi:10.1007/978-3-031-57793-2_6

    • NLM

      Silva DJ da, Miranda PAV de, Alves WAL, Hashimoto RF, Kosinka J, Roerdink JBTM. Differential maximum euclidean distance transform computation in component trees [Internet]. Discrete Geometry and Mathematical Morphology. DGMM 2024. Lecture Notes in Computer Science vol 14605. 2024 ;[citado 2025 nov. 25 ] Available from: https://doi.org/10.1007/978-3-031-57793-2_6

    • Vancouver

      Silva DJ da, Miranda PAV de, Alves WAL, Hashimoto RF, Kosinka J, Roerdink JBTM. Differential maximum euclidean distance transform computation in component trees [Internet]. Discrete Geometry and Mathematical Morphology. DGMM 2024. Lecture Notes in Computer Science vol 14605. 2024 ;[citado 2025 nov. 25 ] Available from: https://doi.org/10.1007/978-3-031-57793-2_6

  • Artigo de periodico

    LncRNA PTENP1/miR-21/PTEN axis modulates EMT and drug resistance in cancer: dynamic Boolean modeling for cell Fates in DNA damage response (2024)

    Gupta, Shantanu ; Silveira, Daner Acunha ; Lorenzoni, Pedro R. ; Mombach, Jose Carlos M. ; Hashimoto, Ronaldo Fumio

    Source: International Journal of Molecular Sciences. Unidade: IME

    Subjects: MEDICAMENTO, RNA, GEOMETRIA E MODELAGEM COMPUTACIONAL, NEOPLASIAS, BIOINFORMÁTICA

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      GUPTA, Shantanu et al. LncRNA PTENP1/miR-21/PTEN axis modulates EMT and drug resistance in cancer: dynamic Boolean modeling for cell Fates in DNA damage response. International Journal of Molecular Sciences, v. 25, n. artigo 8264, p. 1-17, 2024Tradução . . Disponível em: https://doi.org/10.3390/ijms25158264. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Silveira, D. A., Lorenzoni, P. R., Mombach, J. C. M., & Hashimoto, R. F. (2024). LncRNA PTENP1/miR-21/PTEN axis modulates EMT and drug resistance in cancer: dynamic Boolean modeling for cell Fates in DNA damage response. International Journal of Molecular Sciences, 25( artigo 8264), 1-17. doi:10.3390/ijms25158264

    • NLM

      Gupta S, Silveira DA, Lorenzoni PR, Mombach JCM, Hashimoto RF. LncRNA PTENP1/miR-21/PTEN axis modulates EMT and drug resistance in cancer: dynamic Boolean modeling for cell Fates in DNA damage response [Internet]. International Journal of Molecular Sciences. 2024 ; 25( artigo 8264): 1-17.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/ijms25158264

    • Vancouver

      Gupta S, Silveira DA, Lorenzoni PR, Mombach JCM, Hashimoto RF. LncRNA PTENP1/miR-21/PTEN axis modulates EMT and drug resistance in cancer: dynamic Boolean modeling for cell Fates in DNA damage response [Internet]. International Journal of Molecular Sciences. 2024 ; 25( artigo 8264): 1-17.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/ijms25158264

  • Artigo de periodico

    A dynamic Boolean network reveals that the BMI1 and MALAT1 axis is associated with drug resistance by limiting miR-145-5p in non-small cell lung cancer (2024)

    Gupta, Shantanu ; Silveira, Daner Acunha ; Piedade, Gabriel Pinheiro Strini ; Ostrowski, Miguel P.; Mombach, Jose Carlos M. ; Hashimoto, Ronaldo Fumio

    Source: Non-coding RNA Research. Unidades: IME, Interunidades em Bioinformática

    Subjects: NEOPLASIAS PULMONARES, ÁLGEBRAS DE BOOLE, APOPTOSE

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      GUPTA, Shantanu et al. A dynamic Boolean network reveals that the BMI1 and MALAT1 axis is associated with drug resistance by limiting miR-145-5p in non-small cell lung cancer. Non-coding RNA Research, v. 9, n. 1, p. 185-193, 2024Tradução . . Disponível em: https://doi.org/10.1016/j.ncrna.2023.10.008. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Silveira, D. A., Piedade, G. P. S., Ostrowski, M. P., Mombach, J. C. M., & Hashimoto, R. F. (2024). A dynamic Boolean network reveals that the BMI1 and MALAT1 axis is associated with drug resistance by limiting miR-145-5p in non-small cell lung cancer. Non-coding RNA Research, 9( 1), 185-193. doi:10.1016/j.ncrna.2023.10.008

    • NLM

      Gupta S, Silveira DA, Piedade GPS, Ostrowski MP, Mombach JCM, Hashimoto RF. A dynamic Boolean network reveals that the BMI1 and MALAT1 axis is associated with drug resistance by limiting miR-145-5p in non-small cell lung cancer [Internet]. Non-coding RNA Research. 2024 ; 9( 1): 185-193.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.ncrna.2023.10.008

    • Vancouver

      Gupta S, Silveira DA, Piedade GPS, Ostrowski MP, Mombach JCM, Hashimoto RF. A dynamic Boolean network reveals that the BMI1 and MALAT1 axis is associated with drug resistance by limiting miR-145-5p in non-small cell lung cancer [Internet]. Non-coding RNA Research. 2024 ; 9( 1): 185-193.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.ncrna.2023.10.008

  • Artigo de periodico

    The genetically encoded calcium indicator GCaMP3 reveals spontaneous calcium oscillations at asexual stages of the human malaria parasite Plasmodium falciparum (2024)

    Santos, Benedito Matheus dos ; Pecenin, Mateus Fila; Pereira, Lucas Borges; Springer, Eric; Przyborski, Jude Marek ; Martins Junior, David C; Hashimoto, Ronaldo Fumio ; Garcia, Célia Regina da Silva

    Source: Molecular and Biochemical Parasitology. Unidades: IME, FCF, FCFRP

    Subjects: PLASMODIUM FALCIPARUM, MALÁRIA, CÁLCIO

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      SANTOS, Benedito Matheus dos et al. The genetically encoded calcium indicator GCaMP3 reveals spontaneous calcium oscillations at asexual stages of the human malaria parasite Plasmodium falciparum. Molecular and Biochemical Parasitology, v. 260, p. 1-10 art. 111650, 2024Tradução . . Disponível em: https://dx.doi.org/10.1016/j.molbiopara.2024.111650. Acesso em: 25 nov. 2025.

    • APA

      Santos, B. M. dos, Pecenin, M. F., Pereira, L. B., Springer, E., Przyborski, J. M., Martins Junior, D. C., et al. (2024). The genetically encoded calcium indicator GCaMP3 reveals spontaneous calcium oscillations at asexual stages of the human malaria parasite Plasmodium falciparum. Molecular and Biochemical Parasitology, 260, 1-10 art. 111650. doi:10.1016/j.molbiopara.2024.111650

    • NLM

      Santos BM dos, Pecenin MF, Pereira LB, Springer E, Przyborski JM, Martins Junior DC, Hashimoto RF, Garcia CR da S. The genetically encoded calcium indicator GCaMP3 reveals spontaneous calcium oscillations at asexual stages of the human malaria parasite Plasmodium falciparum [Internet]. Molecular and Biochemical Parasitology. 2024 ; 260 1-10 art. 111650.[citado 2025 nov. 25 ] Available from: https://dx.doi.org/10.1016/j.molbiopara.2024.111650

    • Vancouver

      Santos BM dos, Pecenin MF, Pereira LB, Springer E, Przyborski JM, Martins Junior DC, Hashimoto RF, Garcia CR da S. The genetically encoded calcium indicator GCaMP3 reveals spontaneous calcium oscillations at asexual stages of the human malaria parasite Plasmodium falciparum [Internet]. Molecular and Biochemical Parasitology. 2024 ; 260 1-10 art. 111650.[citado 2025 nov. 25 ] Available from: https://dx.doi.org/10.1016/j.molbiopara.2024.111650

  • Artigo de periodico

    A Boolean model of the oncogene role of FAM111B in lung adenocarcinoma (2023)

    Gupta, Shantanu ; Silveira, Daner Acunha; Hashimoto, Ronaldo Fumio

    Source: Computational Biology and Chemistry. Unidade: IME

    Subjects: ÁLGEBRAS DE BOOLE, COMPUTAÇÃO APLICADA, NEOPLASIAS PULMONARES

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      GUPTA, Shantanu e SILVEIRA, Daner Acunha e HASHIMOTO, Ronaldo Fumio. A Boolean model of the oncogene role of FAM111B in lung adenocarcinoma. Computational Biology and Chemistry, v. 106, p. 1-6, 2023Tradução . . Disponível em: https://doi.org/10.1016/j.compbiolchem.2023.107926. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Silveira, D. A., & Hashimoto, R. F. (2023). A Boolean model of the oncogene role of FAM111B in lung adenocarcinoma. Computational Biology and Chemistry, 106, 1-6. doi:10.1016/j.compbiolchem.2023.107926

    • NLM

      Gupta S, Silveira DA, Hashimoto RF. A Boolean model of the oncogene role of FAM111B in lung adenocarcinoma [Internet]. Computational Biology and Chemistry. 2023 ; 106 1-6.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.compbiolchem.2023.107926

    • Vancouver

      Gupta S, Silveira DA, Hashimoto RF. A Boolean model of the oncogene role of FAM111B in lung adenocarcinoma [Internet]. Computational Biology and Chemistry. 2023 ; 106 1-6.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.compbiolchem.2023.107926

  • Artigo de periodico

    Quadra-stable dynamics of p53 and PTEN in the DNA damage response (2023)

    Gupta, Shantanu ; Panda, Pritam Kumar ; Silveira, Daner Acunha ; Ahuja, Rajeev ; Hashimoto, Ronaldo Fumio

    Source: Cells. Unidade: IME

    Subjects: DNA, ANÁLISE DE SÉRIES TEMPORAIS, ÁLGEBRAS DE BOOLE

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    • ABNT

      GUPTA, Shantanu et al. Quadra-stable dynamics of p53 and PTEN in the DNA damage response. Cells, v. 12, n. artigo 1085, p. 1-17, 2023Tradução . . Disponível em: https://doi.org/10.3390/cells12071085. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Panda, P. K., Silveira, D. A., Ahuja, R., & Hashimoto, R. F. (2023). Quadra-stable dynamics of p53 and PTEN in the DNA damage response. Cells, 12( artigo 1085), 1-17. doi:10.3390/cells12071085

    • NLM

      Gupta S, Panda PK, Silveira DA, Ahuja R, Hashimoto RF. Quadra-stable dynamics of p53 and PTEN in the DNA damage response [Internet]. Cells. 2023 ; 12( artigo 1085): 1-17.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/cells12071085

    • Vancouver

      Gupta S, Panda PK, Silveira DA, Ahuja R, Hashimoto RF. Quadra-stable dynamics of p53 and PTEN in the DNA damage response [Internet]. Cells. 2023 ; 12( artigo 1085): 1-17.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/cells12071085

  • Artigo de periodico

    The lncRNA DLX6-AS1/miR-16-5p axis regulates autophagy and apoptosis in non-small cell lung cancer: a Boolean model of cell death (2023)

    Gupta, Shantanu ; Silveira, Daner Acunha ; Mombach, Jose Carlos M. ; Hashimoto, Ronaldo Fumio

    Source: Non-coding RNA Research. Unidade: IME

    Subjects: APOPTOSE, ÁLGEBRAS DE BOOLE, COMPUTAÇÃO APLICADA, NEOPLASIAS PULMONARES

    Versão PublicadaAcesso à fonteDOIHow to cite
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    • ABNT

      GUPTA, Shantanu et al. The lncRNA DLX6-AS1/miR-16-5p axis regulates autophagy and apoptosis in non-small cell lung cancer: a Boolean model of cell death. Non-coding RNA Research, v. 8, n. 4, p. 605-614, 2023Tradução . . Disponível em: https://doi.org/10.1016/j.ncrna.2023.08.003. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Silveira, D. A., Mombach, J. C. M., & Hashimoto, R. F. (2023). The lncRNA DLX6-AS1/miR-16-5p axis regulates autophagy and apoptosis in non-small cell lung cancer: a Boolean model of cell death. Non-coding RNA Research, 8( 4), 605-614. doi:10.1016/j.ncrna.2023.08.003

    • NLM

      Gupta S, Silveira DA, Mombach JCM, Hashimoto RF. The lncRNA DLX6-AS1/miR-16-5p axis regulates autophagy and apoptosis in non-small cell lung cancer: a Boolean model of cell death [Internet]. Non-coding RNA Research. 2023 ; 8( 4): 605-614.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.ncrna.2023.08.003

    • Vancouver

      Gupta S, Silveira DA, Mombach JCM, Hashimoto RF. The lncRNA DLX6-AS1/miR-16-5p axis regulates autophagy and apoptosis in non-small cell lung cancer: a Boolean model of cell death [Internet]. Non-coding RNA Research. 2023 ; 8( 4): 605-614.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1016/j.ncrna.2023.08.003

  • Trabalho de evento

    Biological sequence analysis using complex networks and entropy maximization: a case study in SARS-CoV-2 (2023)

    Pimenta-Zanon, Matheus H. ; de Souza, Vinicius Augusto; Hashimoto, Ronaldo Fumio ; Lopes, Fabricio Martins

    Source: Ambient intelligence in health care : proceedings. Conference titles: International Conference on Ambient Intelligence in Health Care - ICAIHC. Unidade: IME

    Subjects: REDES COMPLEXAS, ENTROPIA, COVID-19, ANÁLISE SEQUENCIAL, BIOINFORMÁTICA, RECONHECIMENTO DE PADRÕES

    Acesso à fonteDOIHow to cite
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    • ABNT

      PIMENTA-ZANON, Matheus H. et al. Biological sequence analysis using complex networks and entropy maximization: a case study in SARS-CoV-2. 2023, Anais.. Heidelberg: Springer, 2023. Disponível em: https://doi.org/10.1007/978-981-19-6068-0_44. Acesso em: 25 nov. 2025.

    • APA

      Pimenta-Zanon, M. H., de Souza, V. A., Hashimoto, R. F., & Lopes, F. M. (2023). Biological sequence analysis using complex networks and entropy maximization: a case study in SARS-CoV-2. In Ambient intelligence in health care : proceedings. Heidelberg: Springer. doi:10.1007/978-981-19-6068-0_44

    • NLM

      Pimenta-Zanon MH, de Souza VA, Hashimoto RF, Lopes FM. Biological sequence analysis using complex networks and entropy maximization: a case study in SARS-CoV-2 [Internet]. Ambient intelligence in health care : proceedings. 2023 ;[citado 2025 nov. 25 ] Available from: https://doi.org/10.1007/978-981-19-6068-0_44

    • Vancouver

      Pimenta-Zanon MH, de Souza VA, Hashimoto RF, Lopes FM. Biological sequence analysis using complex networks and entropy maximization: a case study in SARS-CoV-2 [Internet]. Ambient intelligence in health care : proceedings. 2023 ;[citado 2025 nov. 25 ] Available from: https://doi.org/10.1007/978-981-19-6068-0_44

  • Trabalho de evento

    Exploring identifiability in hybrid models of cell signaling pathways (2023)

    Sousa, Ronaldo Nogueira de ; Campos, Cristiano G. S ; Wang, Willian ; Hashimoto, Ronaldo Fumio ; Armelin, Hugo Aguirre ; Reis, Marcelo S.

    Conference titles: Brazilian Symposium on Bioinformatics - BSB. Unidades: IME, IQ, Interunidades em Bioinformática

    Subjects: PROBLEMAS INVERSOS, REDES NEURAIS, APRENDIZADO COMPUTACIONAL

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    • ABNT

      SOUSA, Ronaldo Nogueira de et al. Exploring identifiability in hybrid models of cell signaling pathways. 2023, Anais.. Cham: Springer, 2023. Disponível em: https://doi.org/10.1007/978-3-031-42715-2_14. Acesso em: 25 nov. 2025.

    • APA

      Sousa, R. N. de, Campos, C. G. S., Wang, W., Hashimoto, R. F., Armelin, H. A., & Reis, M. S. (2023). Exploring identifiability in hybrid models of cell signaling pathways. In . Cham: Springer. doi:10.1007/978-3-031-42715-2_14

    • NLM

      Sousa RN de, Campos CGS, Wang W, Hashimoto RF, Armelin HA, Reis MS. Exploring identifiability in hybrid models of cell signaling pathways [Internet]. 2023 ;[citado 2025 nov. 25 ] Available from: https://doi.org/10.1007/978-3-031-42715-2_14

    • Vancouver

      Sousa RN de, Campos CGS, Wang W, Hashimoto RF, Armelin HA, Reis MS. Exploring identifiability in hybrid models of cell signaling pathways [Internet]. 2023 ;[citado 2025 nov. 25 ] Available from: https://doi.org/10.1007/978-3-031-42715-2_14

  • Artigo de periodico

    Dynamical analysis of a Boolean network model of the oncogene role of lncRNA ANRIL and lncRNA UFC1 in non-dmall vell lung cancer (2022)

    Gupta, Shantanu ; Hashimoto, Ronaldo Fumio

    Source: Biomolecules. Unidade: IME

    Subjects: FUNÇÕES BOOLEANAS, RNA

    Versão PublicadaAcesso à fonteDOIHow to cite
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    • ABNT

      GUPTA, Shantanu e HASHIMOTO, Ronaldo Fumio. Dynamical analysis of a Boolean network model of the oncogene role of lncRNA ANRIL and lncRNA UFC1 in non-dmall vell lung cancer. Biomolecules, v. 12, n. artigo 420, p. 1-19, 2022Tradução . . Disponível em: https://doi.org/10.3390/biom12030420. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., & Hashimoto, R. F. (2022). Dynamical analysis of a Boolean network model of the oncogene role of lncRNA ANRIL and lncRNA UFC1 in non-dmall vell lung cancer. Biomolecules, 12( artigo 420), 1-19. doi:10.3390/biom12030420

    • NLM

      Gupta S, Hashimoto RF. Dynamical analysis of a Boolean network model of the oncogene role of lncRNA ANRIL and lncRNA UFC1 in non-dmall vell lung cancer [Internet]. Biomolecules. 2022 ; 12( artigo 420): 1-19.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/biom12030420

    • Vancouver

      Gupta S, Hashimoto RF. Dynamical analysis of a Boolean network model of the oncogene role of lncRNA ANRIL and lncRNA UFC1 in non-dmall vell lung cancer [Internet]. Biomolecules. 2022 ; 12( artigo 420): 1-19.[citado 2025 nov. 25 ] Available from: https://doi.org/10.3390/biom12030420

  • Artigo de periodico

    Dynamical modeling of miR‑34a, miR‑449a, and miR‑16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells (2022)

    Gupta, Shantanu ; Panda, Pritam Kumar ; Hashimoto, Ronaldo Fumio ; Samal, Shailesh Kumar ; Mishra, Suman ; Verma, Suresh Kr.; Mishra, Yogendra Kumar ; Ahuja, Rajeev

    Source: Scientific Reports. Unidade: IME

    Assunto: CIÊNCIA DA COMPUTAÇÃO

    Versão PublicadaAcesso à fonteDOIHow to cite
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    • ABNT

      GUPTA, Shantanu et al. Dynamical modeling of miR‑34a, miR‑449a, and miR‑16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells. Scientific Reports, v. 12, n. artigo 4911, p. 1-13, 2022Tradução . . Disponível em: https://doi.org/10.1038/s41598-022-08900-y. Acesso em: 25 nov. 2025.

    • APA

      Gupta, S., Panda, P. K., Hashimoto, R. F., Samal, S. K., Mishra, S., Verma, S. K., et al. (2022). Dynamical modeling of miR‑34a, miR‑449a, and miR‑16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells. Scientific Reports, 12( artigo 4911), 1-13. doi:10.1038/s41598-022-08900-y

    • NLM

      Gupta S, Panda PK, Hashimoto RF, Samal SK, Mishra S, Verma SK, Mishra YK, Ahuja R. Dynamical modeling of miR‑34a, miR‑449a, and miR‑16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells [Internet]. Scientific Reports. 2022 ; 12( artigo 4911): 1-13.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1038/s41598-022-08900-y

    • Vancouver

      Gupta S, Panda PK, Hashimoto RF, Samal SK, Mishra S, Verma SK, Mishra YK, Ahuja R. Dynamical modeling of miR‑34a, miR‑449a, and miR‑16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells [Internet]. Scientific Reports. 2022 ; 12( artigo 4911): 1-13.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1038/s41598-022-08900-y

  • Artigo de jornal-dep/entr

    Nosso compromisso é com a construção do diálogo, afirma novo diretor do IME: Sérgio Muniz Oliva Filho e Ronaldo Fumio Hashimoto tomaram posse como novo diretor e novo vice-diretor, respectivamente, do Instituto de Matemática e Estatística (IME) (2022)

    Oliva, Sérgio Muniz ; Hashimoto, Ronaldo Fumio

    Source: Jornal da USP. Unidade: IME

    Assunto: ESTRUTURA ORGANIZACIONAL

    Versão PublicadaAcesso à fonteHow to cite
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    • ABNT

      OLIVA, Sérgio Muniz e HASHIMOTO, Ronaldo Fumio. Nosso compromisso é com a construção do diálogo, afirma novo diretor do IME: Sérgio Muniz Oliva Filho e Ronaldo Fumio Hashimoto tomaram posse como novo diretor e novo vice-diretor, respectivamente, do Instituto de Matemática e Estatística (IME). Jornal da USP. São Paulo: Instituto de Matemática e Estatística, Universidade de São Paulo. Disponível em: https://jornal.usp.br/?p=540829. Acesso em: 25 nov. 2025. , 2022

    • APA

      Oliva, S. M., & Hashimoto, R. F. (2022). Nosso compromisso é com a construção do diálogo, afirma novo diretor do IME: Sérgio Muniz Oliva Filho e Ronaldo Fumio Hashimoto tomaram posse como novo diretor e novo vice-diretor, respectivamente, do Instituto de Matemática e Estatística (IME). Jornal da USP. São Paulo: Instituto de Matemática e Estatística, Universidade de São Paulo. Recuperado de https://jornal.usp.br/?p=540829

    • NLM

      Oliva SM, Hashimoto RF. Nosso compromisso é com a construção do diálogo, afirma novo diretor do IME: Sérgio Muniz Oliva Filho e Ronaldo Fumio Hashimoto tomaram posse como novo diretor e novo vice-diretor, respectivamente, do Instituto de Matemática e Estatística (IME) [Internet]. Jornal da USP. 2022 ;[citado 2025 nov. 25 ] Available from: https://jornal.usp.br/?p=540829

    • Vancouver

      Oliva SM, Hashimoto RF. Nosso compromisso é com a construção do diálogo, afirma novo diretor do IME: Sérgio Muniz Oliva Filho e Ronaldo Fumio Hashimoto tomaram posse como novo diretor e novo vice-diretor, respectivamente, do Instituto de Matemática e Estatística (IME) [Internet]. Jornal da USP. 2022 ;[citado 2025 nov. 25 ] Available from: https://jornal.usp.br/?p=540829

  • Artigo de periodico

    SARS‑CoV‑2 host prediction based on virus‑host genetic features (2022)

    Kawashima, Irina Yuri ; Lopez, Maria Claudia Negret ; Cunha, Marielton dos Passos ; Hashimoto, Ronaldo Fumio

    Source: Scientific Reports. Unidades: IME, Interunidades em Bioinformática

    Subjects: GEOMETRIA E MODELAGEM COMPUTACIONAL, BIOINFORMÁTICA

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    • ABNT

      KAWASHIMA, Irina Yuri et al. SARS‑CoV‑2 host prediction based on virus‑host genetic features. Scientific Reports, v. 12, n. artigo 4576, p. 1-9, 2022Tradução . . Disponível em: https://doi.org/10.1038/s41598-022-08350-6. Acesso em: 25 nov. 2025.

    • APA

      Kawashima, I. Y., Lopez, M. C. N., Cunha, M. dos P., & Hashimoto, R. F. (2022). SARS‑CoV‑2 host prediction based on virus‑host genetic features. Scientific Reports, 12( artigo 4576), 1-9. doi:10.1038/s41598-022-08350-6

    • NLM

      Kawashima IY, Lopez MCN, Cunha M dos P, Hashimoto RF. SARS‑CoV‑2 host prediction based on virus‑host genetic features [Internet]. Scientific Reports. 2022 ; 12( artigo 4576): 1-9.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1038/s41598-022-08350-6

    • Vancouver

      Kawashima IY, Lopez MCN, Cunha M dos P, Hashimoto RF. SARS‑CoV‑2 host prediction based on virus‑host genetic features [Internet]. Scientific Reports. 2022 ; 12( artigo 4576): 1-9.[citado 2025 nov. 25 ] Available from: https://doi.org/10.1038/s41598-022-08350-6

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